Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00384 and SMc00385 are separated by 291 nucleotides SMc00385 and SMc00386 are separated by 3 nucleotides SMc00386 and SMc00387 are separated by 208 nucleotides
SMc00384: SMc00384 - transcriptional regulation protein, at 337,736 to 338,245
SMc00384
SMc00385: SMc00385 - hypothetical protein, at 338,537 to 339,010
SMc00385
SMc00386: SMc00386 - hypothetical protein, at 339,014 to 339,364
SMc00386
SMc00387: SMc00387 - aromatic amino acid aminotransferase, at 339,573 to 340,742
SMc00387
Position (kb) 339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 338.018 kb on + strand, within SMc00384 at 338.018 kb on + strand, within SMc00384 at 338.018 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.156 kb on + strand, within SMc00384 at 338.251 kb on - strand at 338.251 kb on - strand at 338.251 kb on - strand at 338.251 kb on - strand at 338.268 kb on - strand at 338.268 kb on - strand at 338.268 kb on - strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.503 kb on + strand at 338.529 kb on + strand at 338.718 kb on + strand, within SMc00385 at 338.937 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.943 kb on + strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 338.944 kb on - strand, within SMc00385 at 339.015 kb on + strand at 339.015 kb on + strand at 339.016 kb on - strand at 339.016 kb on - strand at 339.037 kb on - strand at 339.173 kb on - strand, within SMc00386 at 339.267 kb on + strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.268 kb on - strand, within SMc00386 at 339.283 kb on - strand, within SMc00386 at 339.355 kb on + strand at 339.355 kb on + strand at 339.401 kb on + strand at 339.551 kb on + strand at 339.656 kb on + strand at 339.656 kb on + strand at 339.656 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.658 kb on + strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.659 kb on - strand at 339.687 kb on - strand at 339.687 kb on - strand at 339.907 kb on + strand, within SMc00387 at 340.114 kb on + strand, within SMc00387 at 340.275 kb on - strand, within SMc00387 at 340.315 kb on + strand, within SMc00387
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 338,018 + SMc00384 0.55 +0.6 338,018 + SMc00384 0.55 -0.5 338,018 + SMc00384 0.55 -0.1 338,156 + SMc00384 0.82 +0.8 338,156 + SMc00384 0.82 +2.4 338,156 + SMc00384 0.82 +0.4 338,156 + SMc00384 0.82 +0.2 338,251 - -0.1 338,251 - -0.1 338,251 - +1.1 338,251 - -0.2 338,268 - -0.3 338,268 - -0.1 338,268 - -0.0 338,503 + +0.4 338,503 + -0.1 338,503 + +0.0 338,503 + -0.7 338,503 + -0.8 338,503 + -1.0 338,529 + +1.1 338,718 + SMc00385 0.38 -1.5 338,937 + SMc00385 0.84 +0.6 338,943 + SMc00385 0.86 -1.2 338,943 + SMc00385 0.86 +0.4 338,943 + SMc00385 0.86 -0.1 338,943 + SMc00385 0.86 -0.0 338,943 + SMc00385 0.86 +0.3 338,943 + SMc00385 0.86 +0.4 338,944 - SMc00385 0.86 -0.1 338,944 - SMc00385 0.86 +0.0 338,944 - SMc00385 0.86 -0.4 338,944 - SMc00385 0.86 -2.9 339,015 + -0.9 339,015 + -1.5 339,016 - -0.2 339,016 - +0.1 339,037 - +0.7 339,173 - SMc00386 0.45 -0.1 339,267 + SMc00386 0.72 +0.1 339,268 - SMc00386 0.72 -0.6 339,268 - SMc00386 0.72 -0.1 339,268 - SMc00386 0.72 -0.6 339,268 - SMc00386 0.72 +0.8 339,283 - SMc00386 0.77 +0.1 339,355 + -0.3 339,355 + +0.1 339,401 + -0.5 339,551 + -0.1 339,656 + -0.3 339,656 + +0.0 339,656 + +0.3 339,658 + +0.4 339,658 + -0.2 339,658 + -1.0 339,658 + -0.7 339,658 + +1.3 339,659 - -0.2 339,659 - -0.3 339,659 - -0.3 339,659 - +0.6 339,659 - -0.1 339,659 - +0.1 339,659 - +0.3 339,659 - -0.6 339,659 - -0.2 339,687 - +1.2 339,687 - -0.7 339,907 + SMc00387 0.29 -0.4 340,114 + SMc00387 0.46 -1.1 340,275 - SMc00387 0.60 +0.5 340,315 + SMc00387 0.63 -0.7
Or see this region's nucleotide sequence