Strain Fitness in Sinorhizobium meliloti 1021 around SMc00164

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
2,000,096	+		SMc00165	0.35	+0.3
2,000,144	+		SMc00165	0.41	+0.0
2,000,144	+		SMc00165	0.41	-0.1
2,000,144	+		SMc00165	0.41	+0.4
2,000,145	-		SMc00165	0.41	-1.6
2,000,145	-		SMc00165	0.41	-0.4
2,000,145	-		SMc00165	0.41	+0.5
2,000,233	+		SMc00165	0.52	-0.2
2,000,233	+		SMc00165	0.52	-1.2
2,000,233	+		SMc00165	0.52	+0.0
2,000,234	-		SMc00165	0.52	+0.6
2,000,234	-		SMc00165	0.52	-1.6
2,000,432	-		SMc00165	0.76	+0.1
2,000,435	+		SMc00165	0.76	+0.3
2,000,435	+		SMc00165	0.76	-0.2
2,000,435	+		SMc00165	0.76	+1.1
2,000,435	+		SMc00165	0.76	+0.1
2,000,435	+		SMc00165	0.76	+1.6
2,000,435	+		SMc00165	0.76	+0.7
2,000,435	+		SMc00165	0.76	-0.1
2,000,436	-		SMc00165	0.77	+1.7
2,000,658	+				-0.9
2,000,712	-				+0.3
2,000,712	-				-0.8
2,000,955	-				-1.0
2,000,964	-				-1.1
2,000,987	+				+0.2
2,001,001	+				-0.9
2,001,007	-				+1.7
2,001,154	+		SMc00164	0.13	+0.1
2,001,154	+		SMc00164	0.13	+0.4
2,001,155	-		SMc00164	0.13	-1.9
2,001,300	+		SMc00164	0.25	-1.1
2,001,430	+		SMc00164	0.36	+0.7
2,001,463	+		SMc00164	0.39	-0.2
2,001,464	-				+0.6
2,001,475	+		SMc00164	0.40	-0.6
2,001,475	+		SMc00164	0.40	-1.0
2,001,475	+		SMc00164	0.40	-1.0
2,001,476	-		SMc00164	0.40	-0.5
2,001,476	-		SMc00164	0.40	+0.1
2,001,485	+		SMc00164	0.41	-0.4
2,001,485	+		SMc00164	0.41	+0.2
2,001,485	+		SMc00164	0.41	-0.2
2,001,485	+		SMc00164	0.41	-0.4
2,001,486	-		SMc00164	0.41	+0.5
2,001,597	+		SMc00164	0.50	+0.1
2,001,597	+		SMc00164	0.50	+0.4
2,001,597	+		SMc00164	0.50	-0.4
2,001,598	-		SMc00164	0.50	-0.3
2,001,598	-		SMc00164	0.50	-0.3
2,001,598	-		SMc00164	0.50	+0.1
2,001,628	+		SMc00164	0.53	+0.1
2,001,629	-		SMc00164	0.53	-0.6
2,001,629	-		SMc00164	0.53	-0.5
2,001,694	+		SMc00164	0.58	-0.3
2,001,694	+		SMc00164	0.58	-0.6
2,001,695	-		SMc00164	0.58	-0.1
2,002,040	-		SMc00164	0.87	-0.6
2,002,040	-		SMc00164	0.87	-0.4
2,002,040	-		SMc00164	0.87	+0.1
2,002,228	+				+0.6
2,002,228	+				+0.6
2,002,230	+				+0.3
2,002,231	-				+0.8
2,002,250	+				-0.6
2,002,342	-				+0.1
2,002,455	-		SMc00163	0.16	+0.2
2,002,468	+		SMc00163	0.17	+0.5
2,002,469	-		SMc00163	0.17	-0.0
2,002,558	-		SMc00163	0.26	-0.7
2,002,655	+		SMc00163	0.36	+0.3
2,002,655	+		SMc00163	0.36	-0.6
2,002,656	-		SMc00163	0.36	-0.1
2,002,656	-		SMc00163	0.36	-0.1
2,002,771	+		SMc00163	0.47	-1.0
2,002,772	-		SMc00163	0.47	-0.5
2,002,813	+		SMc00163	0.51	-1.2
2,002,942	-		SMc00163	0.64	+0.1
2,003,041	+		SMc00163	0.73	+1.7