Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0376 and SMa5018 are separated by 64 nucleotides SMa5018 and SMa0380 overlap by 1 nucleotides
SMa0376: SMa0376 - hydrolase, at 201,366 to 202,055
SMa0376
SMa5018: SMa5018 - hypothetical protein, at 202,120 to 202,407
SMa5018
SMa0380: SMa0380 - hydrolase, at 202,407 to 204,389
SMa0380
Position (kb) 202
203 Strain fitness (log2 ratio) -1
0
1 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.718 kb on + strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.719 kb on - strand, within SMa0376 at 201.774 kb on + strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.775 kb on - strand, within SMa0376 at 201.918 kb on + strand, within SMa0376 at 201.918 kb on + strand, within SMa0376 at 201.919 kb on - strand, within SMa0376 at 201.919 kb on - strand, within SMa0376 at 201.978 kb on + strand, within SMa0376 at 201.984 kb on + strand, within SMa0376 at 201.984 kb on + strand, within SMa0376 at 201.985 kb on - strand, within SMa0376 at 201.985 kb on - strand, within SMa0376 at 202.017 kb on - strand at 202.053 kb on + strand at 202.053 kb on + strand at 202.054 kb on - strand at 202.129 kb on + strand at 202.130 kb on - strand at 202.136 kb on + strand at 202.137 kb on - strand at 202.171 kb on + strand, within SMa5018 at 202.360 kb on - strand, within SMa5018 at 202.504 kb on + strand at 202.504 kb on + strand at 202.504 kb on + strand at 202.740 kb on + strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.741 kb on - strand, within SMa0380 at 202.947 kb on + strand, within SMa0380 at 202.947 kb on + strand, within SMa0380 at 202.993 kb on - strand, within SMa0380 at 202.993 kb on - strand, within SMa0380 at 203.048 kb on + strand, within SMa0380 at 203.133 kb on + strand, within SMa0380 at 203.223 kb on + strand, within SMa0380 at 203.224 kb on - strand, within SMa0380 at 203.235 kb on + strand, within SMa0380 at 203.236 kb on - strand, within SMa0380 at 203.236 kb on - strand, within SMa0380 at 203.289 kb on + strand, within SMa0380 at 203.290 kb on - strand, within SMa0380
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 201,718 + SMa0376 0.51 -0.6 201,718 + SMa0376 0.51 +0.1 201,718 + SMa0376 0.51 -0.5 201,718 + SMa0376 0.51 +0.1 201,719 - SMa0376 0.51 -0.4 201,719 - SMa0376 0.51 -0.3 201,719 - SMa0376 0.51 +0.6 201,719 - SMa0376 0.51 -0.3 201,719 - SMa0376 0.51 +0.9 201,719 - SMa0376 0.51 -0.2 201,774 + SMa0376 0.59 -0.4 201,775 - SMa0376 0.59 -0.4 201,775 - SMa0376 0.59 -0.4 201,775 - SMa0376 0.59 +0.6 201,775 - SMa0376 0.59 +0.0 201,918 + SMa0376 0.80 -0.0 201,918 + SMa0376 0.80 -0.5 201,919 - SMa0376 0.80 -0.2 201,919 - SMa0376 0.80 -0.7 201,978 + SMa0376 0.89 -0.4 201,984 + SMa0376 0.90 +0.3 201,984 + SMa0376 0.90 +0.3 201,985 - SMa0376 0.90 -1.4 201,985 - SMa0376 0.90 +0.1 202,017 - -0.2 202,053 + +0.1 202,053 + +0.6 202,054 - -0.4 202,129 + -0.7 202,130 - -0.2 202,136 + +0.2 202,137 - -0.0 202,171 + SMa5018 0.18 -0.7 202,360 - SMa5018 0.83 -1.2 202,504 + -0.7 202,504 + +0.1 202,504 + -0.3 202,740 + SMa0380 0.17 -0.4 202,741 - SMa0380 0.17 -0.7 202,741 - SMa0380 0.17 +0.0 202,741 - SMa0380 0.17 -0.0 202,947 + SMa0380 0.27 +0.5 202,947 + SMa0380 0.27 -0.3 202,993 - SMa0380 0.30 -0.6 202,993 - SMa0380 0.30 +0.5 203,048 + SMa0380 0.32 -0.2 203,133 + SMa0380 0.37 -0.3 203,223 + SMa0380 0.41 -1.5 203,224 - SMa0380 0.41 -0.3 203,235 + SMa0380 0.42 -0.1 203,236 - SMa0380 0.42 -0.4 203,236 - SMa0380 0.42 +0.8 203,289 + SMa0380 0.44 -0.3 203,290 - SMa0380 0.45 -0.9
Or see this region's nucleotide sequence