Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0917 and SMa5006 are separated by 566 nucleotides SMa5006 and SMa0922 are separated by 619 nucleotides
SMa0917: SMa0917 - hypothetical protein, at 509,885 to 510,211
SMa0917
SMa5006: SMa5006 - hypothetical protein, at 510,778 to 511,137
SMa5006
SMa0922: SMa0922 - hypothetical protein, at 511,757 to 512,080
SMa0922
Position (kb) 510
511
512 Strain fitness (log2 ratio) -1
0
1 at 509.822 kb on + strand at 509.823 kb on - strand at 509.829 kb on - strand at 509.833 kb on - strand at 509.899 kb on + strand at 509.900 kb on - strand at 509.990 kb on + strand, within SMa0917 at 509.996 kb on + strand, within SMa0917 at 509.997 kb on - strand, within SMa0917 at 509.997 kb on - strand, within SMa0917 at 509.997 kb on - strand, within SMa0917 at 510.143 kb on - strand, within SMa0917 at 510.227 kb on + strand at 510.233 kb on + strand at 510.234 kb on - strand at 510.257 kb on + strand at 510.258 kb on - strand at 510.284 kb on - strand at 510.305 kb on + strand at 510.305 kb on + strand at 510.609 kb on + strand at 510.609 kb on + strand at 510.610 kb on - strand at 510.610 kb on - strand at 510.912 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.915 kb on - strand, within SMa5006 at 510.915 kb on - strand, within SMa5006 at 510.964 kb on - strand, within SMa5006 at 510.966 kb on + strand, within SMa5006 at 510.966 kb on + strand, within SMa5006 at 510.967 kb on - strand, within SMa5006 at 510.990 kb on + strand, within SMa5006 at 510.991 kb on - strand, within SMa5006 at 511.007 kb on - strand, within SMa5006 at 511.093 kb on + strand, within SMa5006 at 511.298 kb on + strand at 511.299 kb on - strand at 511.331 kb on + strand at 511.497 kb on + strand at 511.498 kb on - strand at 511.544 kb on + strand at 511.545 kb on - strand at 511.545 kb on - strand at 511.556 kb on - strand at 511.557 kb on + strand at 511.596 kb on + strand at 511.890 kb on - strand, within SMa0922 at 511.967 kb on + strand, within SMa0922 at 511.967 kb on + strand, within SMa0922 at 511.967 kb on + strand, within SMa0922 at 511.968 kb on - strand, within SMa0922
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 509,822 + +0.1 509,823 - +0.6 509,829 - -0.4 509,833 - +1.3 509,899 + +0.4 509,900 - +0.1 509,990 + SMa0917 0.32 -0.8 509,996 + SMa0917 0.34 -0.9 509,997 - SMa0917 0.34 -0.6 509,997 - SMa0917 0.34 +0.0 509,997 - SMa0917 0.34 +0.8 510,143 - SMa0917 0.79 +0.5 510,227 + +0.2 510,233 + +0.4 510,234 - -1.2 510,257 + -0.5 510,258 - +0.5 510,284 - +0.4 510,305 + +0.6 510,305 + -0.1 510,609 + -0.5 510,609 + +0.1 510,610 - +0.2 510,610 - +0.5 510,912 + SMa5006 0.37 -1.0 510,914 + SMa5006 0.38 +0.5 510,914 + SMa5006 0.38 -0.3 510,914 + SMa5006 0.38 +0.2 510,914 + SMa5006 0.38 -0.1 510,914 + SMa5006 0.38 +0.2 510,914 + SMa5006 0.38 +0.2 510,915 - SMa5006 0.38 +0.3 510,915 - SMa5006 0.38 +0.2 510,964 - SMa5006 0.52 +1.1 510,966 + SMa5006 0.52 -0.8 510,966 + SMa5006 0.52 +0.5 510,967 - SMa5006 0.53 -0.0 510,990 + SMa5006 0.59 -1.7 510,991 - SMa5006 0.59 -0.4 511,007 - SMa5006 0.64 +0.3 511,093 + SMa5006 0.88 -0.0 511,298 + +0.4 511,299 - -0.6 511,331 + -0.2 511,497 + -0.2 511,498 - -0.1 511,544 + -0.0 511,545 - +0.2 511,545 - -0.2 511,556 - +1.6 511,557 + +0.1 511,596 + +0.2 511,890 - SMa0922 0.41 +1.0 511,967 + SMa0922 0.65 +0.5 511,967 + SMa0922 0.65 +0.4 511,967 + SMa0922 0.65 +0.7 511,968 - SMa0922 0.65 +0.2
Or see this region's nucleotide sequence