Strain Fitness in Sinorhizobium meliloti 1021 around SMa1533

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1531 and SMa1532 overlap by 4 nucleotidesSMa1532 and SMa1533 overlap by 13 nucleotidesSMa1533 and SMa1535 are separated by 215 nucleotides SMa1531: SMa1531 - NuoC2 NADH I chain C, at 844,305 to 844,853 SMa1531 SMa1532: SMa1532 - NADH dehydrogenase subunit B, at 844,850 to 845,353 SMa1532 SMa1533: SMa1533 - NuoA2 NADH I chain A, at 845,341 to 845,706 SMa1533 SMa1535: SMa1535 - NuoN2 NADH I chain N, at 845,922 to 847,361 SMa1535 Position (kb) 845 846Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 844.378 kb on - strand, within SMa1531at 844.397 kb on - strand, within SMa1531at 844.453 kb on + strand, within SMa1531at 844.453 kb on + strand, within SMa1531at 844.453 kb on + strand, within SMa1531at 844.495 kb on + strand, within SMa1531at 844.495 kb on + strand, within SMa1531at 844.495 kb on + strand, within SMa1531at 844.495 kb on + strand, within SMa1531at 844.496 kb on - strand, within SMa1531at 844.496 kb on - strand, within SMa1531at 844.500 kb on - strand, within SMa1531at 844.500 kb on - strand, within SMa1531at 844.618 kb on + strand, within SMa1531at 844.618 kb on + strand, within SMa1531at 844.618 kb on + strand, within SMa1531at 844.627 kb on + strand, within SMa1531at 844.627 kb on + strand, within SMa1531at 844.628 kb on - strand, within SMa1531at 844.674 kb on + strand, within SMa1531at 844.674 kb on + strand, within SMa1531at 844.675 kb on - strand, within SMa1531at 844.675 kb on - strand, within SMa1531at 844.765 kb on + strand, within SMa1531at 844.765 kb on + strand, within SMa1531at 844.765 kb on + strand, within SMa1531at 844.766 kb on - strand, within SMa1531at 844.766 kb on - strand, within SMa1531at 844.859 kb on + strandat 844.859 kb on + strandat 844.859 kb on + strandat 844.859 kb on + strandat 844.859 kb on + strandat 844.859 kb on + strandat 844.860 kb on - strandat 844.860 kb on - strandat 844.860 kb on - strandat 844.860 kb on - strandat 844.860 kb on - strandat 844.860 kb on - strandat 844.860 kb on - strandat 844.860 kb on - strandat 844.860 kb on - strandat 844.861 kb on + strandat 845.016 kb on + strand, within SMa1532at 845.016 kb on + strand, within SMa1532at 845.016 kb on + strand, within SMa1532at 845.017 kb on - strand, within SMa1532at 845.017 kb on - strand, within SMa1532at 845.017 kb on - strand, within SMa1532at 845.025 kb on + strand, within SMa1532at 845.025 kb on + strand, within SMa1532at 845.026 kb on - strand, within SMa1532at 845.202 kb on + strand, within SMa1532at 845.318 kb on + strandat 845.318 kb on + strandat 845.318 kb on + strandat 845.319 kb on - strandat 845.379 kb on - strand, within SMa1533at 845.396 kb on - strand, within SMa1533at 845.396 kb on - strand, within SMa1533at 845.509 kb on - strand, within SMa1533at 845.517 kb on + strand, within SMa1533at 845.568 kb on + strand, within SMa1533at 845.580 kb on - strand, within SMa1533at 845.672 kb on + strandat 845.674 kb on - strandat 845.706 kb on + strandat 845.822 kb on + strandat 845.823 kb on - strandat 845.858 kb on + strandat 845.858 kb on + strandat 845.859 kb on - strandat 845.861 kb on + strandat 845.862 kb on - strandat 845.902 kb on + strandat 846.070 kb on + strand, within SMa1535at 846.070 kb on + strand, within SMa1535at 846.070 kb on + strand, within SMa1535at 846.070 kb on + strand, within SMa1535at 846.070 kb on + strand, within SMa1535at 846.071 kb on - strand, within SMa1535at 846.094 kb on + strand, within SMa1535at 846.095 kb on - strand, within SMa1535at 846.095 kb on - strand, within SMa1535at 846.178 kb on + strand, within SMa1535at 846.233 kb on - strand, within SMa1535at 846.233 kb on - strand, within SMa1535at 846.364 kb on + strand, within SMa1535at 846.364 kb on + strand, within SMa1535at 846.365 kb on - strand, within SMa1535at 846.365 kb on - strand, within SMa1535at 846.376 kb on + strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.377 kb on - strand, within SMa1535at 846.384 kb on + strand, within SMa1535at 846.384 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.661 kb on + strand, within SMa1535at 846.662 kb on - strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.680 kb on + strand, within SMa1535at 846.681 kb on - strand, within SMa1535

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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844,378 - SMa1531 0.13 +1.8
844,397 - SMa1531 0.17 +0.0
844,453 + SMa1531 0.27 +0.1
844,453 + SMa1531 0.27 -3.0
844,453 + SMa1531 0.27 -0.2
844,495 + SMa1531 0.35 +0.6
844,495 + SMa1531 0.35 +0.4
844,495 + SMa1531 0.35 -1.2
844,495 + SMa1531 0.35 +0.2
844,496 - SMa1531 0.35 +0.6
844,496 - SMa1531 0.35 +0.1
844,500 - SMa1531 0.36 -1.2
844,500 - SMa1531 0.36 +0.2
844,618 + SMa1531 0.57 -0.0
844,618 + SMa1531 0.57 +0.4
844,618 + SMa1531 0.57 -2.4
844,627 + SMa1531 0.59 +0.6
844,627 + SMa1531 0.59 -1.2
844,628 - SMa1531 0.59 +2.0
844,674 + SMa1531 0.67 -1.3
844,674 + SMa1531 0.67 +0.4
844,675 - SMa1531 0.67 -2.7
844,675 - SMa1531 0.67 +0.3
844,765 + SMa1531 0.84 +0.6
844,765 + SMa1531 0.84 -0.3
844,765 + SMa1531 0.84 -0.1
844,766 - SMa1531 0.84 +0.5
844,766 - SMa1531 0.84 +0.3
844,859 + -0.3
844,859 + -0.2
844,859 + +0.6
844,859 + +0.7
844,859 + +0.9
844,859 + -1.7
844,860 - +1.2
844,860 - -1.1
844,860 - +0.0
844,860 - -0.5
844,860 - +0.3
844,860 - -0.0
844,860 - -0.3
844,860 - -0.2
844,860 - +0.1
844,861 + +0.8
845,016 + SMa1532 0.33 -0.2
845,016 + SMa1532 0.33 -0.4
845,016 + SMa1532 0.33 -0.6
845,017 - SMa1532 0.33 -0.9
845,017 - SMa1532 0.33 +2.6
845,017 - SMa1532 0.33 +0.1
845,025 + SMa1532 0.35 -2.2
845,025 + SMa1532 0.35 -0.4
845,026 - SMa1532 0.35 -0.1
845,202 + SMa1532 0.70 -1.5
845,318 + -0.4
845,318 + -1.0
845,318 + -0.3
845,319 - -0.4
845,379 - SMa1533 0.10 +0.4
845,396 - SMa1533 0.15 -0.5
845,396 - SMa1533 0.15 -0.5
845,509 - SMa1533 0.46 +0.3
845,517 + SMa1533 0.48 +1.0
845,568 + SMa1533 0.62 +0.3
845,580 - SMa1533 0.65 -0.2
845,672 + -0.3
845,674 - -0.9
845,706 + +0.0
845,822 + -1.0
845,823 - +0.2
845,858 + -0.4
845,858 + -0.8
845,859 - +0.6
845,861 + +0.2
845,862 - +0.1
845,902 + -1.0
846,070 + SMa1535 0.10 -2.5
846,070 + SMa1535 0.10 +0.1
846,070 + SMa1535 0.10 -0.3
846,070 + SMa1535 0.10 +0.0
846,070 + SMa1535 0.10 +0.3
846,071 - SMa1535 0.10 -0.3
846,094 + SMa1535 0.12 +0.9
846,095 - SMa1535 0.12 -1.0
846,095 - SMa1535 0.12 +0.2
846,178 + SMa1535 0.18 -0.5
846,233 - SMa1535 0.22 +0.1
846,233 - SMa1535 0.22 -0.2
846,364 + SMa1535 0.31 -0.3
846,364 + SMa1535 0.31 +0.4
846,365 - SMa1535 0.31 +0.3
846,365 - SMa1535 0.31 -0.6
846,376 + SMa1535 0.32 +0.7
846,377 - SMa1535 0.32 -0.6
846,377 - SMa1535 0.32 -0.3
846,377 - SMa1535 0.32 +0.5
846,384 + SMa1535 0.32 -0.9
846,384 + SMa1535 0.32 +0.4
846,661 + SMa1535 0.51 -1.3
846,661 + SMa1535 0.51 +0.3
846,661 + SMa1535 0.51 -0.2
846,661 + SMa1535 0.51 +1.4
846,662 - SMa1535 0.51 -0.0
846,680 + SMa1535 0.53 -0.2
846,680 + SMa1535 0.53 -0.4
846,680 + SMa1535 0.53 -0.2
846,680 + SMa1535 0.53 -1.0
846,680 + SMa1535 0.53 -1.6
846,681 - SMa1535 0.53 +0.5

Or see this region's nucleotide sequence