Strain Fitness in Sinorhizobium meliloti 1021 around SMa1491

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1488 and SMa1491 overlap by 4 nucleotidesSMa1491 and SMa1493 are separated by 159 nucleotides SMa1488: SMa1488 - oxidoreductase, at 819,849 to 822,092 SMa1488 SMa1491: SMa1491 - Oxidoreductase, at 822,089 to 822,553 SMa1491 SMa1493: SMa1493 - LysR family transcriptional regulator, at 822,713 to 823,636 SMa1493 Position (kb) 822 823Strain fitness (log2 ratio) -2 -1 0 1 2at 821.099 kb on - strand, within SMa1488at 821.411 kb on - strand, within SMa1488at 821.675 kb on + strand, within SMa1488at 821.689 kb on + strand, within SMa1488at 821.689 kb on + strand, within SMa1488at 821.690 kb on - strand, within SMa1488at 821.690 kb on - strand, within SMa1488at 821.690 kb on - strand, within SMa1488at 821.746 kb on + strand, within SMa1488at 821.746 kb on + strand, within SMa1488at 821.835 kb on + strand, within SMa1488at 821.835 kb on + strand, within SMa1488at 821.836 kb on - strand, within SMa1488at 821.836 kb on - strand, within SMa1488at 822.071 kb on + strandat 822.072 kb on - strandat 822.072 kb on - strandat 822.148 kb on + strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.149 kb on - strand, within SMa1491at 822.150 kb on + strand, within SMa1491at 822.150 kb on + strand, within SMa1491at 822.150 kb on + strand, within SMa1491at 822.151 kb on - strand, within SMa1491at 822.221 kb on + strand, within SMa1491at 822.221 kb on + strand, within SMa1491at 822.221 kb on + strand, within SMa1491at 822.222 kb on - strand, within SMa1491at 822.302 kb on + strand, within SMa1491at 822.450 kb on + strand, within SMa1491at 822.450 kb on + strand, within SMa1491at 822.451 kb on - strand, within SMa1491at 822.529 kb on + strandat 822.529 kb on + strandat 822.637 kb on + strandat 822.668 kb on - strandat 822.708 kb on - strandat 822.708 kb on - strandat 822.712 kb on + strandat 822.712 kb on + strandat 822.712 kb on + strandat 822.713 kb on - strandat 822.802 kb on - strandat 822.945 kb on + strand, within SMa1493at 822.946 kb on - strand, within SMa1493at 822.946 kb on - strand, within SMa1493at 822.967 kb on + strand, within SMa1493at 823.071 kb on - strand, within SMa1493at 823.233 kb on - strand, within SMa1493at 823.322 kb on + strand, within SMa1493at 823.322 kb on + strand, within SMa1493at 823.323 kb on - strand, within SMa1493at 823.323 kb on - strand, within SMa1493at 823.326 kb on + strand, within SMa1493at 823.326 kb on + strand, within SMa1493at 823.326 kb on + strand, within SMa1493at 823.326 kb on + strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.327 kb on - strand, within SMa1493at 823.397 kb on + strand, within SMa1493at 823.397 kb on + strand, within SMa1493at 823.398 kb on - strand, within SMa1493at 823.434 kb on + strand, within SMa1493at 823.435 kb on - strand, within SMa1493at 823.439 kb on + strand, within SMa1493at 823.439 kb on + strand, within SMa1493at 823.440 kb on - strand, within SMa1493at 823.440 kb on - strand, within SMa1493at 823.489 kb on - strand, within SMa1493at 823.527 kb on - strand, within SMa1493at 823.530 kb on - strand, within SMa1493at 823.535 kb on + strand, within SMa1493at 823.535 kb on + strand, within SMa1493at 823.535 kb on + strand, within SMa1493at 823.536 kb on - strand, within SMa1493at 823.538 kb on + strand, within SMa1493at 823.538 kb on + strand, within SMa1493at 823.538 kb on + strand, within SMa1493

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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821,099 - SMa1488 0.56 -1.2
821,411 - SMa1488 0.70 -2.3
821,675 + SMa1488 0.81 -0.1
821,689 + SMa1488 0.82 -0.1
821,689 + SMa1488 0.82 +0.1
821,690 - SMa1488 0.82 -0.0
821,690 - SMa1488 0.82 +1.1
821,690 - SMa1488 0.82 +0.1
821,746 + SMa1488 0.85 +0.5
821,746 + SMa1488 0.85 +0.9
821,835 + SMa1488 0.89 +0.8
821,835 + SMa1488 0.89 -0.2
821,836 - SMa1488 0.89 -0.6
821,836 - SMa1488 0.89 -0.3
822,071 + -0.6
822,072 - +0.3
822,072 - +0.0
822,148 + SMa1491 0.13 -0.0
822,149 - SMa1491 0.13 -0.8
822,149 - SMa1491 0.13 -0.3
822,149 - SMa1491 0.13 -0.7
822,149 - SMa1491 0.13 -1.0
822,149 - SMa1491 0.13 -1.3
822,149 - SMa1491 0.13 -0.5
822,150 + SMa1491 0.13 -0.7
822,150 + SMa1491 0.13 -0.6
822,150 + SMa1491 0.13 -0.1
822,151 - SMa1491 0.13 -0.9
822,221 + SMa1491 0.28 -0.1
822,221 + SMa1491 0.28 -0.1
822,221 + SMa1491 0.28 -1.2
822,222 - SMa1491 0.29 -0.8
822,302 + SMa1491 0.46 +0.3
822,450 + SMa1491 0.78 -1.4
822,450 + SMa1491 0.78 -0.3
822,451 - SMa1491 0.78 -0.4
822,529 + -0.7
822,529 + +1.6
822,637 + -0.2
822,668 - +2.6
822,708 - -0.5
822,708 - -1.7
822,712 + -0.0
822,712 + +0.6
822,712 + -1.0
822,713 - -0.2
822,802 - +0.5
822,945 + SMa1493 0.25 +0.9
822,946 - SMa1493 0.25 -0.3
822,946 - SMa1493 0.25 -0.2
822,967 + SMa1493 0.27 -1.1
823,071 - SMa1493 0.39 -0.1
823,233 - SMa1493 0.56 -0.2
823,322 + SMa1493 0.66 +0.2
823,322 + SMa1493 0.66 +1.2
823,323 - SMa1493 0.66 -0.3
823,323 - SMa1493 0.66 +0.3
823,326 + SMa1493 0.66 -1.1
823,326 + SMa1493 0.66 -1.0
823,326 + SMa1493 0.66 -0.1
823,326 + SMa1493 0.66 -0.1
823,327 - SMa1493 0.66 +0.1
823,327 - SMa1493 0.66 +0.3
823,327 - SMa1493 0.66 +0.1
823,327 - SMa1493 0.66 -0.5
823,327 - SMa1493 0.66 -0.0
823,397 + SMa1493 0.74 -1.5
823,397 + SMa1493 0.74 -1.4
823,398 - SMa1493 0.74 -0.4
823,434 + SMa1493 0.78 -0.4
823,435 - SMa1493 0.78 +2.4
823,439 + SMa1493 0.79 -0.2
823,439 + SMa1493 0.79 -0.3
823,440 - SMa1493 0.79 +0.2
823,440 - SMa1493 0.79 -0.8
823,489 - SMa1493 0.84 +0.4
823,527 - SMa1493 0.88 +0.4
823,530 - SMa1493 0.88 -0.4
823,535 + SMa1493 0.89 -1.3
823,535 + SMa1493 0.89 -0.6
823,535 + SMa1493 0.89 +1.2
823,536 - SMa1493 0.89 +0.2
823,538 + SMa1493 0.89 +0.2
823,538 + SMa1493 0.89 +0.6
823,538 + SMa1493 0.89 +2.3

Or see this region's nucleotide sequence