Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1427 and SMa1428 are separated by 249 nucleotides SMa1428 and SMa1430 are separated by 1 nucleotides SMa1430 and SMa1431 are separated by 47 nucleotides SMa1431 and SMa1434 are separated by 172 nucleotides
SMa1427: SMa1427 - ABC transporter substrate-binding protein, at 785,430 to 786,548
SMa1427
SMa1428: SMa1428 - TetR/AcrR family transcriptional regulator, at 786,798 to 787,457
SMa1428
SMa1430: SMa1430 - Dehydrogenase, Zn-dependent, at 787,459 to 788,475
SMa1430
SMa1431: SMa1431 - hypothetical protein, at 788,523 to 789,041
SMa1431
SMa1434: SMa1434 - ABC transporter ATP-binding protein, at 789,214 to 790,866
SMa1434
Position (kb) 787
788
789 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 786.755 kb on - strand at 786.976 kb on - strand, within SMa1428 at 786.982 kb on - strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.029 kb on + strand, within SMa1428 at 787.123 kb on - strand at 787.123 kb on - strand, within SMa1428 at 787.125 kb on + strand, within SMa1428 at 787.125 kb on + strand, within SMa1428 at 787.126 kb on - strand, within SMa1428 at 787.335 kb on + strand, within SMa1428 at 787.335 kb on + strand, within SMa1428 at 787.336 kb on - strand, within SMa1428 at 787.336 kb on - strand, within SMa1428 at 787.338 kb on + strand, within SMa1428 at 787.338 kb on + strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.339 kb on - strand, within SMa1428 at 787.426 kb on + strand at 787.426 kb on + strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.427 kb on - strand at 787.523 kb on + strand at 787.524 kb on + strand at 787.671 kb on - strand, within SMa1430 at 788.202 kb on + strand, within SMa1430 at 788.260 kb on - strand, within SMa1430 at 788.373 kb on + strand, within SMa1430 at 788.423 kb on + strand at 788.423 kb on + strand at 788.423 kb on + strand at 788.461 kb on + strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.462 kb on - strand at 788.573 kb on - strand at 788.573 kb on - strand at 788.595 kb on + strand, within SMa1431 at 788.595 kb on + strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.596 kb on - strand, within SMa1431 at 788.633 kb on - strand, within SMa1431 at 788.774 kb on + strand, within SMa1431 at 788.815 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 788.862 kb on + strand, within SMa1431 at 789.078 kb on - strand at 789.215 kb on + strand at 789.216 kb on - strand at 789.287 kb on + strand at 789.287 kb on + strand at 789.288 kb on - strand at 789.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 786,755 - +1.3 786,976 - SMa1428 0.27 +3.4 786,982 - SMa1428 0.28 +0.6 787,029 + SMa1428 0.35 +2.6 787,029 + SMa1428 0.35 +1.1 787,029 + SMa1428 0.35 -0.5 787,029 + SMa1428 0.35 -0.3 787,123 - +0.0 787,123 - SMa1428 0.49 -1.0 787,125 + SMa1428 0.50 -0.7 787,125 + SMa1428 0.50 +0.2 787,126 - SMa1428 0.50 -0.5 787,335 + SMa1428 0.81 +0.0 787,335 + SMa1428 0.81 -0.2 787,336 - SMa1428 0.82 +0.6 787,336 - SMa1428 0.82 +0.3 787,338 + SMa1428 0.82 +0.7 787,338 + SMa1428 0.82 +0.3 787,339 - SMa1428 0.82 +1.1 787,339 - SMa1428 0.82 -0.1 787,339 - SMa1428 0.82 +0.2 787,339 - SMa1428 0.82 -0.2 787,339 - SMa1428 0.82 -2.7 787,339 - SMa1428 0.82 +2.8 787,426 + -0.2 787,426 + -0.5 787,427 - -0.3 787,427 - +0.9 787,427 - -0.2 787,427 - -1.3 787,523 + -1.1 787,524 + -0.9 787,671 - SMa1430 0.21 -1.1 788,202 + SMa1430 0.73 -0.2 788,260 - SMa1430 0.79 -0.5 788,373 + SMa1430 0.90 -1.0 788,423 + -0.6 788,423 + +0.0 788,423 + -1.6 788,461 + -0.9 788,462 - -0.1 788,462 - +1.0 788,462 - +0.3 788,573 - -1.0 788,573 - +1.8 788,595 + SMa1431 0.14 -0.1 788,595 + SMa1431 0.14 -0.1 788,596 - SMa1431 0.14 +0.3 788,596 - SMa1431 0.14 -0.2 788,596 - SMa1431 0.14 -1.6 788,633 - SMa1431 0.21 -0.4 788,774 + SMa1431 0.48 -1.4 788,815 + SMa1431 0.56 +0.4 788,862 + SMa1431 0.65 -0.0 788,862 + SMa1431 0.65 -0.7 788,862 + SMa1431 0.65 -0.4 789,078 - -1.7 789,215 + -2.7 789,216 - -0.6 789,287 + +0.0 789,287 + -0.1 789,288 - +1.3 789,288 - -0.3
Or see this region's nucleotide sequence