Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1209 and SMa1210 overlap by 4 nucleotides SMa1210 and SMa1211 overlap by 4 nucleotides SMa1211 and SMa1213 are separated by 228 nucleotides
SMa1209: SMa1209 - FixI1 ATPase, at 662,787 to 665,060
SMa1209
SMa1210: SMa1210 - nitrogen fixation protein FixH, at 665,057 to 665,560
SMa1210
SMa1211: SMa1211 - FixG iron sulfur membrane protein, at 665,557 to 667,131
SMa1211
SMa1213: SMa1213 - FixP1 di-heme cytochrome c, at 667,360 to 668,229
SMa1213
Position (kb) 665
666
667
668 Strain fitness (log2 ratio) -1
0
1
2 at 664.794 kb on - strand, within SMa1209 at 664.794 kb on - strand, within SMa1209 at 664.921 kb on + strand at 664.938 kb on + strand at 664.939 kb on - strand at 665.042 kb on + strand at 665.042 kb on + strand at 665.400 kb on + strand, within SMa1210 at 665.400 kb on + strand, within SMa1210 at 665.401 kb on - strand at 665.401 kb on - strand, within SMa1210 at 665.806 kb on - strand, within SMa1211 at 665.806 kb on - strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.849 kb on + strand, within SMa1211 at 665.850 kb on - strand, within SMa1211 at 666.125 kb on + strand, within SMa1211 at 666.126 kb on - strand, within SMa1211 at 666.369 kb on - strand, within SMa1211 at 666.394 kb on + strand at 666.394 kb on + strand, within SMa1211 at 666.395 kb on - strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.429 kb on + strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.430 kb on - strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.431 kb on + strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.432 kb on - strand, within SMa1211 at 666.470 kb on + strand, within SMa1211 at 666.471 kb on - strand, within SMa1211 at 666.533 kb on - strand, within SMa1211 at 666.566 kb on + strand, within SMa1211 at 666.567 kb on - strand, within SMa1211 at 666.567 kb on - strand at 666.567 kb on - strand, within SMa1211 at 666.637 kb on + strand, within SMa1211 at 666.870 kb on - strand, within SMa1211 at 666.953 kb on + strand, within SMa1211 at 666.953 kb on + strand, within SMa1211 at 666.956 kb on + strand, within SMa1211 at 667.151 kb on - strand at 667.361 kb on + strand at 667.653 kb on - strand, within SMa1213 at 667.653 kb on - strand, within SMa1213 at 667.758 kb on + strand, within SMa1213 at 667.767 kb on - strand, within SMa1213 at 667.767 kb on - strand, within SMa1213 at 667.767 kb on - strand, within SMa1213 at 668.085 kb on - strand, within SMa1213 at 668.112 kb on - strand at 668.120 kb on + strand, within SMa1213
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 664,794 - SMa1209 0.88 +0.2 664,794 - SMa1209 0.88 -1.2 664,921 + +1.0 664,938 + +0.3 664,939 - -1.2 665,042 + +1.8 665,042 + -0.4 665,400 + SMa1210 0.68 -0.0 665,400 + SMa1210 0.68 +0.6 665,401 - +1.6 665,401 - SMa1210 0.68 -0.7 665,806 - SMa1211 0.16 -1.0 665,806 - SMa1211 0.16 +0.6 665,849 + SMa1211 0.19 +0.5 665,849 + SMa1211 0.19 -0.4 665,849 + SMa1211 0.19 -0.7 665,850 - SMa1211 0.19 -0.4 666,125 + SMa1211 0.36 +0.4 666,126 - SMa1211 0.36 -1.0 666,369 - SMa1211 0.52 -0.7 666,394 + +2.6 666,394 + SMa1211 0.53 -0.7 666,395 - SMa1211 0.53 -0.5 666,429 + SMa1211 0.55 +0.3 666,429 + SMa1211 0.55 -0.3 666,429 + SMa1211 0.55 +0.2 666,429 + SMa1211 0.55 -0.3 666,429 + SMa1211 0.55 +0.4 666,430 - SMa1211 0.55 -1.4 666,430 - SMa1211 0.55 -0.4 666,430 - SMa1211 0.55 -0.6 666,430 - SMa1211 0.55 +0.8 666,430 - SMa1211 0.55 -1.2 666,430 - SMa1211 0.55 -0.7 666,431 + SMa1211 0.55 -0.7 666,431 + SMa1211 0.55 -0.7 666,431 + SMa1211 0.55 -0.0 666,431 + SMa1211 0.55 +2.2 666,431 + SMa1211 0.55 -1.4 666,432 - SMa1211 0.56 -0.2 666,432 - SMa1211 0.56 -0.4 666,432 - SMa1211 0.56 +0.4 666,432 - SMa1211 0.56 -0.5 666,432 - SMa1211 0.56 -0.2 666,432 - SMa1211 0.56 -1.0 666,470 + SMa1211 0.58 +1.0 666,471 - SMa1211 0.58 -0.5 666,533 - SMa1211 0.62 -0.5 666,566 + SMa1211 0.64 -0.1 666,567 - SMa1211 0.64 +0.6 666,567 - +1.6 666,567 - SMa1211 0.64 -0.3 666,637 + SMa1211 0.69 +0.0 666,870 - SMa1211 0.83 +0.4 666,953 + SMa1211 0.89 -0.7 666,953 + SMa1211 0.89 -0.2 666,956 + SMa1211 0.89 -0.8 667,151 - -0.4 667,361 + +1.0 667,653 - SMa1213 0.34 -0.4 667,653 - SMa1213 0.34 +1.1 667,758 + SMa1213 0.46 -1.4 667,767 - SMa1213 0.47 -0.2 667,767 - SMa1213 0.47 -0.3 667,767 - SMa1213 0.47 -0.1 668,085 - SMa1213 0.83 -0.1 668,112 - -0.2 668,120 + SMa1213 0.87 +1.5
Or see this region's nucleotide sequence