Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5006 and SMa0922 are separated by 619 nucleotides
SMa5006: SMa5006 - hypothetical protein, at 510,778 to 511,137
SMa5006
SMa0922: SMa0922 - hypothetical protein, at 511,757 to 512,080
SMa0922
Position (kb) 511
512
513 Strain fitness (log2 ratio) -1
0
1 at 510.912 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.914 kb on + strand, within SMa5006 at 510.915 kb on - strand, within SMa5006 at 510.915 kb on - strand, within SMa5006 at 510.964 kb on - strand, within SMa5006 at 510.966 kb on + strand, within SMa5006 at 510.966 kb on + strand, within SMa5006 at 510.967 kb on - strand, within SMa5006 at 510.990 kb on + strand, within SMa5006 at 510.991 kb on - strand, within SMa5006 at 511.007 kb on - strand, within SMa5006 at 511.093 kb on + strand, within SMa5006 at 511.298 kb on + strand at 511.299 kb on - strand at 511.331 kb on + strand at 511.497 kb on + strand at 511.498 kb on - strand at 511.544 kb on + strand at 511.545 kb on - strand at 511.545 kb on - strand at 511.556 kb on - strand at 511.557 kb on + strand at 511.596 kb on + strand at 511.890 kb on - strand, within SMa0922 at 511.967 kb on + strand, within SMa0922 at 511.967 kb on + strand, within SMa0922 at 511.967 kb on + strand, within SMa0922 at 511.968 kb on - strand, within SMa0922 at 512.820 kb on - strand at 512.832 kb on + strand at 512.832 kb on + strand at 512.873 kb on + strand at 512.873 kb on + strand at 512.873 kb on + strand at 512.874 kb on - strand at 512.903 kb on - strand at 512.904 kb on + strand at 512.905 kb on - strand at 512.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 510,912 + SMa5006 0.37 -1.0 510,914 + SMa5006 0.38 +0.5 510,914 + SMa5006 0.38 -0.3 510,914 + SMa5006 0.38 +0.2 510,914 + SMa5006 0.38 -0.1 510,914 + SMa5006 0.38 +0.2 510,914 + SMa5006 0.38 +0.2 510,915 - SMa5006 0.38 +0.3 510,915 - SMa5006 0.38 +0.2 510,964 - SMa5006 0.52 +1.1 510,966 + SMa5006 0.52 -0.8 510,966 + SMa5006 0.52 +0.5 510,967 - SMa5006 0.53 -0.0 510,990 + SMa5006 0.59 -1.7 510,991 - SMa5006 0.59 -0.4 511,007 - SMa5006 0.64 +0.3 511,093 + SMa5006 0.88 -0.0 511,298 + +0.4 511,299 - -0.6 511,331 + -0.2 511,497 + -0.2 511,498 - -0.1 511,544 + -0.0 511,545 - +0.2 511,545 - -0.2 511,556 - +1.6 511,557 + +0.1 511,596 + +0.2 511,890 - SMa0922 0.41 +1.0 511,967 + SMa0922 0.65 +0.5 511,967 + SMa0922 0.65 +0.4 511,967 + SMa0922 0.65 +0.7 511,968 - SMa0922 0.65 +0.2 512,820 - -0.4 512,832 + -0.2 512,832 + -0.6 512,873 + +0.2 512,873 + -1.0 512,873 + +0.5 512,874 - +0.8 512,903 - -0.0 512,904 + +0.6 512,905 - +0.2 512,905 - +0.1
Or see this region's nucleotide sequence