Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0861 and SMa0863 are separated by 301 nucleotides SMa0863 and SMa0864 are separated by 3 nucleotides
SMa0861: SMa0861 - transposase, fragment, at 475,959 to 476,840
SMa0861
SMa0863: SMa0863 - NodJ ABC transporter permease, at 477,142 to 477,930
SMa0863
SMa0864: SMa0864 - nodulation factor exporter subunit NodI, at 477,934 to 479,001
SMa0864
Position (kb) 477
478 Strain fitness (log2 ratio) -2
-1
0
1 at 476.179 kb on + strand, within SMa0861 at 476.379 kb on - strand, within SMa0861 at 476.379 kb on - strand, within SMa0861 at 476.485 kb on + strand, within SMa0861 at 476.496 kb on + strand, within SMa0861 at 476.497 kb on - strand, within SMa0861 at 476.497 kb on - strand, within SMa0861 at 476.642 kb on - strand, within SMa0861 at 476.811 kb on + strand at 476.812 kb on - strand at 476.826 kb on - strand at 476.882 kb on + strand at 476.883 kb on - strand at 477.008 kb on - strand at 477.200 kb on + strand at 477.200 kb on + strand at 477.201 kb on - strand at 477.201 kb on - strand at 477.401 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.439 kb on + strand, within SMa0863 at 477.455 kb on - strand, within SMa0863 at 477.455 kb on - strand, within SMa0863 at 477.486 kb on - strand, within SMa0863 at 477.564 kb on + strand, within SMa0863 at 477.565 kb on - strand, within SMa0863 at 477.565 kb on - strand, within SMa0863 at 477.669 kb on - strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.737 kb on + strand, within SMa0863 at 477.738 kb on - strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.799 kb on + strand, within SMa0863 at 477.800 kb on - strand, within SMa0863 at 477.803 kb on - strand, within SMa0863 at 477.964 kb on + strand at 478.037 kb on - strand at 478.037 kb on - strand at 478.109 kb on - strand, within SMa0864 at 478.109 kb on - strand, within SMa0864 at 478.120 kb on + strand, within SMa0864 at 478.142 kb on + strand, within SMa0864 at 478.151 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.264 kb on - strand, within SMa0864 at 478.582 kb on + strand, within SMa0864 at 478.583 kb on - strand, within SMa0864 at 478.604 kb on - strand, within SMa0864 at 478.701 kb on + strand, within SMa0864 at 478.805 kb on + strand, within SMa0864
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 476,179 + SMa0861 0.25 -0.5 476,379 - SMa0861 0.48 -0.6 476,379 - SMa0861 0.48 -0.5 476,485 + SMa0861 0.60 -1.9 476,496 + SMa0861 0.61 -0.5 476,497 - SMa0861 0.61 +0.9 476,497 - SMa0861 0.61 -0.1 476,642 - SMa0861 0.77 -1.5 476,811 + -0.7 476,812 - -0.5 476,826 - -0.0 476,882 + +0.3 476,883 - +1.4 477,008 - +0.3 477,200 + +0.1 477,200 + +0.3 477,201 - -1.0 477,201 - -0.5 477,401 + SMa0863 0.33 -0.2 477,439 + SMa0863 0.38 +0.1 477,439 + SMa0863 0.38 -0.4 477,439 + SMa0863 0.38 -0.5 477,455 - SMa0863 0.40 -0.2 477,455 - SMa0863 0.40 +0.2 477,486 - SMa0863 0.44 +1.3 477,564 + SMa0863 0.53 -1.0 477,565 - SMa0863 0.54 +0.3 477,565 - SMa0863 0.54 -0.5 477,669 - SMa0863 0.67 -0.4 477,737 + SMa0863 0.75 +0.9 477,737 + SMa0863 0.75 +0.0 477,737 + SMa0863 0.75 -0.3 477,738 - SMa0863 0.76 -0.2 477,799 + SMa0863 0.83 -0.0 477,799 + SMa0863 0.83 +0.2 477,799 + SMa0863 0.83 -0.1 477,799 + SMa0863 0.83 -0.0 477,800 - SMa0863 0.83 -0.1 477,803 - SMa0863 0.84 -0.5 477,964 + +0.4 478,037 - -0.2 478,037 - -0.6 478,109 - SMa0864 0.16 -0.4 478,109 - SMa0864 0.16 -0.7 478,120 + SMa0864 0.17 +1.2 478,142 + SMa0864 0.19 -0.1 478,151 - SMa0864 0.20 -1.5 478,264 - SMa0864 0.31 -0.3 478,264 - SMa0864 0.31 +0.7 478,264 - SMa0864 0.31 +0.2 478,582 + SMa0864 0.61 -0.2 478,583 - SMa0864 0.61 -0.3 478,604 - SMa0864 0.63 -1.5 478,701 + SMa0864 0.72 +0.6 478,805 + SMa0864 0.82 -0.1
Or see this region's nucleotide sequence