Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0467 and SMa0469 are separated by 41 nucleotides SMa0469 and SMa0470 are separated by 8 nucleotides SMa0470 and SMa0471 are separated by 662 nucleotides SMa0471 and SMa0473 overlap by 4 nucleotides
SMa0467: SMa0467 - ABC transporter permease, at 253,863 to 254,879
SMa0467
SMa0469: SMa0469 - ABC transporter permease, at 254,921 to 255,718
SMa0469
SMa0470: SMa0470 - ABC transporter ATP-binding protein, at 255,727 to 257,562
SMa0470
SMa0471: SMa0471 - hypothetical protein, at 258,225 to 258,533
SMa0471
SMa0473: SMa0473 - hypothetical protein, at 258,530 to 258,823
SMa0473
Position (kb) 255
256
257
258 Strain fitness (log2 ratio) -2
-1
0
1
2 at 254.832 kb on + strand at 254.833 kb on - strand at 254.834 kb on + strand at 254.835 kb on - strand at 254.959 kb on + strand at 254.959 kb on + strand at 254.960 kb on - strand at 254.960 kb on - strand at 255.082 kb on - strand, within SMa0469 at 255.114 kb on - strand, within SMa0469 at 255.114 kb on - strand, within SMa0469 at 255.401 kb on + strand, within SMa0469 at 255.401 kb on + strand at 255.402 kb on - strand, within SMa0469 at 255.402 kb on - strand, within SMa0469 at 255.402 kb on - strand, within SMa0469 at 255.442 kb on + strand, within SMa0469 at 255.491 kb on + strand, within SMa0469 at 255.492 kb on - strand, within SMa0469 at 255.492 kb on - strand, within SMa0469 at 255.492 kb on - strand, within SMa0469 at 255.495 kb on + strand, within SMa0469 at 255.604 kb on + strand, within SMa0469 at 255.604 kb on + strand, within SMa0469 at 255.607 kb on + strand, within SMa0469 at 255.607 kb on + strand, within SMa0469 at 255.608 kb on - strand, within SMa0469 at 255.880 kb on - strand at 256.014 kb on + strand, within SMa0470 at 256.113 kb on - strand, within SMa0470 at 256.128 kb on + strand, within SMa0470 at 256.129 kb on - strand, within SMa0470 at 256.290 kb on - strand, within SMa0470 at 256.312 kb on - strand, within SMa0470 at 256.312 kb on - strand, within SMa0470 at 256.405 kb on + strand, within SMa0470 at 256.405 kb on + strand, within SMa0470 at 256.405 kb on + strand, within SMa0470 at 256.405 kb on + strand, within SMa0470 at 256.405 kb on + strand, within SMa0470 at 256.406 kb on - strand, within SMa0470 at 256.406 kb on - strand, within SMa0470 at 256.406 kb on - strand, within SMa0470 at 256.406 kb on - strand, within SMa0470 at 256.406 kb on - strand, within SMa0470 at 256.406 kb on - strand, within SMa0470 at 256.414 kb on + strand, within SMa0470 at 256.477 kb on + strand, within SMa0470 at 256.478 kb on - strand, within SMa0470 at 256.478 kb on - strand, within SMa0470 at 256.478 kb on - strand, within SMa0470 at 256.513 kb on + strand, within SMa0470 at 256.515 kb on + strand, within SMa0470 at 256.677 kb on + strand, within SMa0470 at 256.677 kb on + strand, within SMa0470 at 256.677 kb on + strand, within SMa0470 at 256.677 kb on + strand, within SMa0470 at 256.677 kb on + strand, within SMa0470 at 256.678 kb on - strand, within SMa0470 at 256.850 kb on + strand at 256.850 kb on + strand, within SMa0470 at 256.850 kb on + strand, within SMa0470 at 256.856 kb on + strand, within SMa0470 at 256.857 kb on - strand, within SMa0470 at 256.863 kb on + strand, within SMa0470 at 256.863 kb on + strand, within SMa0470 at 257.029 kb on - strand, within SMa0470 at 257.073 kb on - strand, within SMa0470 at 257.085 kb on + strand, within SMa0470 at 257.085 kb on + strand, within SMa0470 at 257.303 kb on + strand, within SMa0470 at 257.304 kb on - strand, within SMa0470 at 257.304 kb on - strand, within SMa0470 at 257.304 kb on - strand, within SMa0470 at 257.380 kb on + strand at 257.380 kb on + strand at 257.380 kb on + strand at 257.381 kb on - strand at 257.392 kb on - strand at 257.392 kb on - strand at 257.435 kb on - strand at 257.435 kb on - strand at 257.435 kb on - strand at 257.435 kb on - strand at 257.443 kb on + strand at 257.444 kb on - strand at 257.444 kb on - strand at 257.444 kb on - strand at 257.490 kb on + strand at 257.506 kb on + strand at 257.507 kb on - strand at 257.507 kb on - strand at 257.507 kb on - strand at 257.508 kb on + strand at 257.508 kb on + strand at 257.509 kb on - strand at 257.509 kb on - strand at 257.707 kb on + strand at 257.708 kb on - strand at 257.708 kb on - strand at 257.775 kb on + strand at 257.868 kb on + strand at 257.868 kb on + strand at 257.871 kb on + strand at 257.871 kb on + strand at 257.871 kb on + strand at 257.871 kb on + strand at 257.872 kb on - strand at 257.903 kb on + strand at 257.903 kb on + strand at 257.904 kb on - strand at 257.904 kb on - strand at 257.948 kb on + strand at 257.949 kb on - strand at 258.007 kb on + strand at 258.103 kb on + strand at 258.104 kb on - strand at 258.104 kb on - strand at 258.108 kb on + strand at 258.108 kb on + strand at 258.109 kb on - strand at 258.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 254,832 + -0.3 254,833 - +0.6 254,834 + +0.5 254,835 - -0.3 254,959 + -0.4 254,959 + -0.2 254,960 - -0.1 254,960 - -0.8 255,082 - SMa0469 0.20 -0.1 255,114 - SMa0469 0.24 -2.0 255,114 - SMa0469 0.24 -1.5 255,401 + SMa0469 0.60 +0.3 255,401 + +0.0 255,402 - SMa0469 0.60 -0.4 255,402 - SMa0469 0.60 +1.0 255,402 - SMa0469 0.60 +0.8 255,442 + SMa0469 0.65 +0.1 255,491 + SMa0469 0.71 +0.3 255,492 - SMa0469 0.72 -0.6 255,492 - SMa0469 0.72 +0.3 255,492 - SMa0469 0.72 +0.8 255,495 + SMa0469 0.72 -0.1 255,604 + SMa0469 0.86 +0.5 255,604 + SMa0469 0.86 +0.2 255,607 + SMa0469 0.86 +0.2 255,607 + SMa0469 0.86 -0.4 255,608 - SMa0469 0.86 +1.0 255,880 - +0.3 256,014 + SMa0470 0.16 -1.2 256,113 - SMa0470 0.21 -1.0 256,128 + SMa0470 0.22 -0.3 256,129 - SMa0470 0.22 +1.6 256,290 - SMa0470 0.31 -0.1 256,312 - SMa0470 0.32 +0.0 256,312 - SMa0470 0.32 -0.4 256,405 + SMa0470 0.37 -0.4 256,405 + SMa0470 0.37 +0.5 256,405 + SMa0470 0.37 +0.5 256,405 + SMa0470 0.37 +0.1 256,405 + SMa0470 0.37 +0.6 256,406 - SMa0470 0.37 +0.0 256,406 - SMa0470 0.37 +0.4 256,406 - SMa0470 0.37 -0.3 256,406 - SMa0470 0.37 +0.2 256,406 - SMa0470 0.37 -0.3 256,406 - SMa0470 0.37 +2.6 256,414 + SMa0470 0.37 -0.7 256,477 + SMa0470 0.41 -0.4 256,478 - SMa0470 0.41 -0.0 256,478 - SMa0470 0.41 -0.4 256,478 - SMa0470 0.41 -0.5 256,513 + SMa0470 0.43 +0.5 256,515 + SMa0470 0.43 -0.2 256,677 + SMa0470 0.52 -0.3 256,677 + SMa0470 0.52 -0.4 256,677 + SMa0470 0.52 +0.5 256,677 + SMa0470 0.52 -0.5 256,677 + SMa0470 0.52 -0.4 256,678 - SMa0470 0.52 -1.2 256,850 + +2.2 256,850 + SMa0470 0.61 -0.1 256,850 + SMa0470 0.61 -1.3 256,856 + SMa0470 0.61 +1.3 256,857 - SMa0470 0.62 -0.8 256,863 + SMa0470 0.62 -0.2 256,863 + SMa0470 0.62 +0.1 257,029 - SMa0470 0.71 -0.2 257,073 - SMa0470 0.73 -0.7 257,085 + SMa0470 0.74 -1.0 257,085 + SMa0470 0.74 -0.6 257,303 + SMa0470 0.86 -1.0 257,304 - SMa0470 0.86 +0.2 257,304 - SMa0470 0.86 +0.6 257,304 - SMa0470 0.86 +0.0 257,380 + +0.8 257,380 + +0.5 257,380 + +0.1 257,381 - -1.1 257,392 - -0.1 257,392 - +0.2 257,435 - +0.6 257,435 - +0.6 257,435 - +1.1 257,435 - +1.0 257,443 + +1.7 257,444 - -0.1 257,444 - -0.2 257,444 - +0.3 257,490 + -0.2 257,506 + +1.3 257,507 - +0.3 257,507 - -0.4 257,507 - -0.1 257,508 + -0.5 257,508 + +2.1 257,509 - -0.1 257,509 - +0.0 257,707 + +0.0 257,708 - -0.2 257,708 - +0.6 257,775 + -0.0 257,868 + -0.0 257,868 + -0.9 257,871 + +0.0 257,871 + +0.2 257,871 + +0.1 257,871 + +0.4 257,872 - +0.0 257,903 + -0.2 257,903 + -0.1 257,904 - -0.4 257,904 - -1.1 257,948 + +1.6 257,949 - +0.5 258,007 + -1.1 258,103 + +0.0 258,104 - +0.6 258,104 - +0.3 258,108 + -0.7 258,108 + +0.0 258,109 - -0.3 258,109 - -0.6
Or see this region's nucleotide sequence