Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0312 and SMa0314 overlap by 4 nucleotides SMa0314 and SMa0316 are separated by 82 nucleotides SMa0316 and SMa0319 are separated by 503 nucleotides
SMa0312: SMa0312 - hypothetical protein, at 175,343 to 175,876
SMa0312
SMa0314: SMa0314 - hypothetical protein, at 175,873 to 176,124
SMa0314
SMa0316: SMa0316 - hypothetical protein, at 176,207 to 177,469
SMa0316
SMa0319: SMa0319 - AraC family transcriptional regulator, at 177,973 to 178,974
SMa0319
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.238 kb on - strand at 175.384 kb on + strand at 175.385 kb on - strand at 175.385 kb on - strand at 175.508 kb on + strand, within SMa0312 at 175.508 kb on + strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.509 kb on - strand, within SMa0312 at 175.900 kb on + strand, within SMa0314 at 176.009 kb on - strand, within SMa0314 at 176.046 kb on + strand, within SMa0314 at 176.047 kb on - strand, within SMa0314 at 176.149 kb on - strand at 176.222 kb on - strand at 176.222 kb on - strand at 176.222 kb on - strand at 176.378 kb on + strand, within SMa0316 at 176.674 kb on + strand, within SMa0316 at 176.740 kb on + strand, within SMa0316 at 176.741 kb on - strand, within SMa0316 at 176.741 kb on - strand, within SMa0316 at 176.855 kb on - strand, within SMa0316 at 176.855 kb on - strand, within SMa0316 at 177.145 kb on + strand, within SMa0316 at 177.290 kb on - strand, within SMa0316 at 177.395 kb on - strand at 177.454 kb on + strand at 177.455 kb on - strand at 177.705 kb on - strand at 177.772 kb on + strand at 177.777 kb on - strand at 177.777 kb on - strand at 177.777 kb on - strand at 177.833 kb on + strand at 177.910 kb on + strand at 177.911 kb on - strand at 177.930 kb on + strand at 177.958 kb on - strand at 178.039 kb on - strand at 178.077 kb on + strand, within SMa0319 at 178.120 kb on + strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.121 kb on - strand, within SMa0319 at 178.124 kb on + strand, within SMa0319 at 178.358 kb on - strand, within SMa0319 at 178.358 kb on - strand, within SMa0319 at 178.412 kb on - strand, within SMa0319 at 178.444 kb on + strand, within SMa0319 at 178.445 kb on - strand, within SMa0319 at 178.445 kb on - strand, within SMa0319 at 178.454 kb on + strand, within SMa0319 at 178.455 kb on - strand, within SMa0319
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 175,238 - +0.8 175,384 + -0.3 175,385 - +0.2 175,385 - +0.3 175,508 + SMa0312 0.31 -0.3 175,508 + SMa0312 0.31 -1.5 175,509 - SMa0312 0.31 -0.1 175,509 - SMa0312 0.31 +0.4 175,900 + SMa0314 0.11 +1.9 176,009 - SMa0314 0.54 +0.6 176,046 + SMa0314 0.69 -1.3 176,047 - SMa0314 0.69 +1.0 176,149 - +1.6 176,222 - -0.7 176,222 - +0.7 176,222 - -1.1 176,378 + SMa0316 0.14 -1.1 176,674 + SMa0316 0.37 -2.2 176,740 + SMa0316 0.42 +0.5 176,741 - SMa0316 0.42 -0.2 176,741 - SMa0316 0.42 -0.2 176,855 - SMa0316 0.51 -0.5 176,855 - SMa0316 0.51 +0.1 177,145 + SMa0316 0.74 -1.5 177,290 - SMa0316 0.86 -0.3 177,395 - +0.2 177,454 + -0.8 177,455 - -0.1 177,705 - -0.9 177,772 + -0.5 177,777 - -0.2 177,777 - -0.3 177,777 - +0.4 177,833 + +0.4 177,910 + -0.4 177,911 - -0.9 177,930 + +0.1 177,958 - +0.1 178,039 - -0.3 178,077 + SMa0319 0.10 -0.5 178,120 + SMa0319 0.15 +0.6 178,121 - SMa0319 0.15 -0.1 178,121 - SMa0319 0.15 +0.2 178,121 - SMa0319 0.15 +1.1 178,124 + SMa0319 0.15 +0.4 178,358 - SMa0319 0.38 -0.4 178,358 - SMa0319 0.38 +0.5 178,412 - SMa0319 0.44 +0.4 178,444 + SMa0319 0.47 +0.0 178,445 - SMa0319 0.47 -0.9 178,445 - SMa0319 0.47 +1.1 178,454 + SMa0319 0.48 +0.2 178,455 - SMa0319 0.48 +0.6
Or see this region's nucleotide sequence