Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21230

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21229 and SM_b21230 are separated by 263 nucleotidesSM_b21230 and SM_b21231 are separated by 68 nucleotides SM_b21229: SM_b21229 - calcium-binding exported protein, at 793,076 to 794,239 _b21229 SM_b21230: SM_b21230 - glycosyltransferase, at 794,503 to 795,585 _b21230 SM_b21231: SM_b21231 - glycosyltransferase, at 795,654 to 796,808 _b21231 Position (kb) 794 795 796Strain fitness (log2 ratio) -1 0 1 2at 793.648 kb on - strand, within SM_b21229at 793.749 kb on + strand, within SM_b21229at 793.749 kb on + strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.750 kb on - strand, within SM_b21229at 793.751 kb on + strand, within SM_b21229at 793.751 kb on + strand, within SM_b21229at 793.752 kb on - strand, within SM_b21229at 793.752 kb on - strand, within SM_b21229at 793.814 kb on + strand, within SM_b21229at 793.851 kb on + strand, within SM_b21229at 793.882 kb on + strand, within SM_b21229at 793.882 kb on + strand, within SM_b21229at 793.883 kb on - strand, within SM_b21229at 793.883 kb on - strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.884 kb on + strand, within SM_b21229at 793.885 kb on - strand, within SM_b21229at 793.885 kb on - strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229at 793.988 kb on + strand, within SM_b21229at 794.073 kb on + strand, within SM_b21229at 794.074 kb on - strand, within SM_b21229at 794.170 kb on - strandat 794.253 kb on - strandat 794.309 kb on + strandat 794.363 kb on + strandat 794.405 kb on + strandat 794.406 kb on - strandat 794.597 kb on + strandat 794.598 kb on - strandat 794.666 kb on - strand, within SM_b21230at 794.810 kb on + strand, within SM_b21230at 794.810 kb on + strand, within SM_b21230at 794.811 kb on - strand, within SM_b21230at 795.016 kb on + strand, within SM_b21230at 795.111 kb on - strand, within SM_b21230at 795.116 kb on + strand, within SM_b21230at 795.117 kb on - strand, within SM_b21230at 795.152 kb on + strand, within SM_b21230at 795.153 kb on - strand, within SM_b21230at 795.157 kb on + strand, within SM_b21230at 795.158 kb on - strand, within SM_b21230at 795.179 kb on - strand, within SM_b21230at 795.220 kb on - strand, within SM_b21230at 795.220 kb on - strand, within SM_b21230at 795.320 kb on + strand, within SM_b21230at 795.320 kb on + strand, within SM_b21230at 795.320 kb on + strand, within SM_b21230at 795.321 kb on - strand, within SM_b21230at 795.416 kb on - strand, within SM_b21230at 795.425 kb on + strand, within SM_b21230at 795.426 kb on - strand, within SM_b21230at 795.487 kb on + strandat 795.488 kb on - strandat 795.580 kb on + strandat 795.580 kb on + strandat 795.580 kb on + strandat 795.580 kb on + strandat 795.581 kb on - strandat 795.581 kb on - strandat 795.581 kb on - strandat 795.581 kb on - strandat 795.596 kb on + strandat 795.596 kb on + strandat 795.597 kb on - strandat 795.597 kb on - strandat 795.820 kb on - strand, within SM_b21231at 795.940 kb on + strand, within SM_b21231at 795.940 kb on + strand, within SM_b21231at 796.141 kb on + strand, within SM_b21231at 796.142 kb on - strand, within SM_b21231at 796.321 kb on + strand, within SM_b21231at 796.322 kb on - strand, within SM_b21231at 796.361 kb on - strand, within SM_b21231at 796.379 kb on - strand, within SM_b21231at 796.379 kb on - strand, within SM_b21231at 796.426 kb on - strand, within SM_b21231at 796.426 kb on - strand, within SM_b21231at 796.428 kb on - strand, within SM_b21231at 796.428 kb on - strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.495 kb on + strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.496 kb on - strand, within SM_b21231at 796.514 kb on + strand, within SM_b21231at 796.514 kb on + strand, within SM_b21231at 796.516 kb on + strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231at 796.517 kb on - strand, within SM_b21231

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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793,648 - SM_b21229 0.49 +0.2
793,749 + SM_b21229 0.58 -0.3
793,749 + SM_b21229 0.58 -0.1
793,750 - SM_b21229 0.58 +0.5
793,750 - SM_b21229 0.58 +0.4
793,750 - SM_b21229 0.58 +1.1
793,750 - SM_b21229 0.58 -0.7
793,751 + SM_b21229 0.58 +1.1
793,751 + SM_b21229 0.58 +0.1
793,752 - SM_b21229 0.58 +0.3
793,752 - SM_b21229 0.58 +0.0
793,814 + SM_b21229 0.63 +0.1
793,851 + SM_b21229 0.67 -0.1
793,882 + SM_b21229 0.69 +0.3
793,882 + SM_b21229 0.69 +0.2
793,883 - SM_b21229 0.69 -0.2
793,883 - SM_b21229 0.69 +0.0
793,884 + SM_b21229 0.69 -0.5
793,884 + SM_b21229 0.69 -0.7
793,884 + SM_b21229 0.69 +0.4
793,884 + SM_b21229 0.69 +0.4
793,885 - SM_b21229 0.70 -0.1
793,885 - SM_b21229 0.70 -1.7
793,988 + SM_b21229 0.78 -1.0
793,988 + SM_b21229 0.78 +0.0
793,988 + SM_b21229 0.78 -0.8
794,073 + SM_b21229 0.86 +0.3
794,074 - SM_b21229 0.86 +0.4
794,170 - +1.8
794,253 - +1.2
794,309 + -0.7
794,363 + +0.2
794,405 + +0.6
794,406 - +0.2
794,597 + -0.1
794,598 - -1.4
794,666 - SM_b21230 0.15 +0.5
794,810 + SM_b21230 0.28 +0.6
794,810 + SM_b21230 0.28 +0.5
794,811 - SM_b21230 0.28 -0.6
795,016 + SM_b21230 0.47 +0.9
795,111 - SM_b21230 0.56 +0.1
795,116 + SM_b21230 0.57 +0.5
795,117 - SM_b21230 0.57 +1.3
795,152 + SM_b21230 0.60 -0.0
795,153 - SM_b21230 0.60 +0.4
795,157 + SM_b21230 0.60 -0.4
795,158 - SM_b21230 0.60 +0.0
795,179 - SM_b21230 0.62 +0.3
795,220 - SM_b21230 0.66 -0.4
795,220 - SM_b21230 0.66 -0.2
795,320 + SM_b21230 0.75 +0.9
795,320 + SM_b21230 0.75 +0.5
795,320 + SM_b21230 0.75 -0.9
795,321 - SM_b21230 0.76 +0.1
795,416 - SM_b21230 0.84 +0.6
795,425 + SM_b21230 0.85 -0.2
795,426 - SM_b21230 0.85 +0.8
795,487 + -0.8
795,488 - -0.0
795,580 + +0.0
795,580 + -0.9
795,580 + +0.2
795,580 + -0.2
795,581 - +0.2
795,581 - +0.0
795,581 - +0.2
795,581 - +0.4
795,596 + -0.2
795,596 + -0.3
795,597 - +0.4
795,597 - -0.9
795,820 - SM_b21231 0.14 -0.4
795,940 + SM_b21231 0.25 +1.6
795,940 + SM_b21231 0.25 -0.1
796,141 + SM_b21231 0.42 +0.2
796,142 - SM_b21231 0.42 +0.2
796,321 + SM_b21231 0.58 -0.3
796,322 - SM_b21231 0.58 -1.5
796,361 - SM_b21231 0.61 +0.6
796,379 - SM_b21231 0.63 -0.4
796,379 - SM_b21231 0.63 +0.9
796,426 - SM_b21231 0.67 -1.0
796,426 - SM_b21231 0.67 -0.1
796,428 - SM_b21231 0.67 +0.6
796,428 - SM_b21231 0.67 -0.4
796,495 + SM_b21231 0.73 +0.1
796,495 + SM_b21231 0.73 -0.9
796,495 + SM_b21231 0.73 +0.2
796,495 + SM_b21231 0.73 -0.3
796,496 - SM_b21231 0.73 +0.2
796,496 - SM_b21231 0.73 -1.1
796,496 - SM_b21231 0.73 -0.2
796,496 - SM_b21231 0.73 +0.1
796,514 + SM_b21231 0.74 +0.3
796,514 + SM_b21231 0.74 +0.7
796,516 + SM_b21231 0.75 -0.0
796,517 - SM_b21231 0.75 -0.3
796,517 - SM_b21231 0.75 -1.1
796,517 - SM_b21231 0.75 +0.0

Or see this region's nucleotide sequence