Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21166 and SM_b21167 are separated by 34 nucleotides SM_b21167 and SM_b21168 are separated by 176 nucleotides
SM_b21166: SM_b21166 - Imidazolonepropionase (EC 3.5.2.7) <small>(from data)</small>, at 912,194 to 913,609
_b21166
SM_b21167: SM_b21167 - reverse transcriptasematurase, at 913,644 to 915,005
_b21167
SM_b21168: SM_b21168 - integral membrane transporter protein, at 915,182 to 916,366
_b21168
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -1
0
1
2 at 912.645 kb on + strand, within SM_b21166 at 912.850 kb on - strand, within SM_b21166 at 912.900 kb on + strand, within SM_b21166 at 912.900 kb on + strand, within SM_b21166 at 912.998 kb on - strand, within SM_b21166 at 913.137 kb on + strand, within SM_b21166 at 913.138 kb on - strand, within SM_b21166 at 913.195 kb on + strand, within SM_b21166 at 913.195 kb on + strand, within SM_b21166 at 913.441 kb on + strand, within SM_b21166 at 913.442 kb on - strand, within SM_b21166 at 913.478 kb on - strand at 913.478 kb on - strand at 913.517 kb on + strand at 914.503 kb on + strand, within SM_b21167 at 914.503 kb on + strand, within SM_b21167 at 914.503 kb on + strand, within SM_b21167 at 914.504 kb on + strand, within SM_b21167 at 914.504 kb on - strand, within SM_b21167 at 914.504 kb on - strand, within SM_b21167 at 914.711 kb on - strand, within SM_b21167 at 915.060 kb on + strand at 915.060 kb on + strand at 915.060 kb on + strand at 915.060 kb on + strand at 915.060 kb on + strand at 915.165 kb on + strand at 915.166 kb on - strand at 915.349 kb on - strand, within SM_b21168 at 915.465 kb on - strand, within SM_b21168 at 915.597 kb on + strand, within SM_b21168 at 915.598 kb on - strand, within SM_b21168 at 915.705 kb on + strand, within SM_b21168 at 915.705 kb on + strand, within SM_b21168 at 915.736 kb on - strand, within SM_b21168
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 912,645 + SM_b21166 0.32 -0.4 912,850 - SM_b21166 0.46 -0.3 912,900 + SM_b21166 0.50 -0.4 912,900 + SM_b21166 0.50 -0.5 912,998 - SM_b21166 0.57 -0.2 913,137 + SM_b21166 0.67 +0.1 913,138 - SM_b21166 0.67 +1.0 913,195 + SM_b21166 0.71 +1.6 913,195 + SM_b21166 0.71 -0.4 913,441 + SM_b21166 0.88 -0.9 913,442 - SM_b21166 0.88 -0.4 913,478 - -0.3 913,478 - -1.1 913,517 + +2.4 914,503 + SM_b21167 0.63 +0.9 914,503 + SM_b21167 0.63 +0.8 914,503 + SM_b21167 0.63 +0.4 914,504 + SM_b21167 0.63 +0.0 914,504 - SM_b21167 0.63 +1.2 914,504 - SM_b21167 0.63 +0.8 914,711 - SM_b21167 0.78 +0.5 915,060 + +0.3 915,060 + +1.6 915,060 + -0.4 915,060 + -1.0 915,060 + -0.3 915,165 + -0.6 915,166 - +0.5 915,349 - SM_b21168 0.14 +0.3 915,465 - SM_b21168 0.24 -0.7 915,597 + SM_b21168 0.35 -0.6 915,598 - SM_b21168 0.35 -0.1 915,705 + SM_b21168 0.44 -0.3 915,705 + SM_b21168 0.44 -0.8 915,736 - SM_b21168 0.47 -0.8
Or see this region's nucleotide sequence