Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21130 and SM_b21131 are separated by 15 nucleotides SM_b21131 and SM_b21132 overlap by 17 nucleotides SM_b21132 and SM_b21133 overlap by 4 nucleotides
SM_b21130: SM_b21130 - sulfate ABC transporter ATP-binding protein, at 769,044 to 770,147
_b21130
SM_b21131: SM_b21131 - sulfate ABC transporter permease, at 770,163 to 771,044
_b21131
SM_b21132: SM_b21132 - sulfate ABC transporter permease, at 771,028 to 771,894
_b21132
SM_b21133: SM_b21133 - sulfate ABC transporter substrate-binding protein, at 771,891 to 772,916
_b21133
Position (kb) 770
771
772 Strain fitness (log2 ratio) -2
-1
0
1 at 769.211 kb on + strand, within SM_b21130 at 769.211 kb on + strand, within SM_b21130 at 769.212 kb on - strand, within SM_b21130 at 769.212 kb on - strand, within SM_b21130 at 769.212 kb on - strand, within SM_b21130 at 769.212 kb on - strand, within SM_b21130 at 769.327 kb on + strand, within SM_b21130 at 769.474 kb on + strand, within SM_b21130 at 769.474 kb on + strand, within SM_b21130 at 769.474 kb on + strand, within SM_b21130 at 769.474 kb on + strand, within SM_b21130 at 769.474 kb on + strand, within SM_b21130 at 769.475 kb on - strand, within SM_b21130 at 769.475 kb on - strand, within SM_b21130 at 770.285 kb on + strand, within SM_b21131 at 770.286 kb on - strand, within SM_b21131 at 770.286 kb on - strand, within SM_b21131 at 770.286 kb on - strand, within SM_b21131 at 770.287 kb on + strand at 770.288 kb on - strand, within SM_b21131 at 770.294 kb on + strand, within SM_b21131 at 770.294 kb on + strand, within SM_b21131 at 770.294 kb on + strand, within SM_b21131 at 770.294 kb on + strand, within SM_b21131 at 770.296 kb on + strand, within SM_b21131 at 770.342 kb on + strand, within SM_b21131 at 770.427 kb on + strand, within SM_b21131 at 770.428 kb on - strand, within SM_b21131 at 770.429 kb on + strand, within SM_b21131 at 770.611 kb on + strand, within SM_b21131 at 770.611 kb on + strand, within SM_b21131 at 770.612 kb on - strand, within SM_b21131 at 770.640 kb on - strand, within SM_b21131 at 771.008 kb on + strand at 771.009 kb on - strand at 771.012 kb on - strand at 771.012 kb on - strand at 771.020 kb on - strand at 771.038 kb on + strand at 771.044 kb on + strand at 771.044 kb on + strand at 771.230 kb on + strand, within SM_b21132 at 771.231 kb on - strand, within SM_b21132 at 771.510 kb on - strand, within SM_b21132 at 771.510 kb on - strand, within SM_b21132 at 771.908 kb on - strand at 771.908 kb on - strand at 771.908 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 769,211 + SM_b21130 0.15 -1.4 769,211 + SM_b21130 0.15 -1.3 769,212 - SM_b21130 0.15 -1.7 769,212 - SM_b21130 0.15 -1.3 769,212 - SM_b21130 0.15 -2.6 769,212 - SM_b21130 0.15 -1.0 769,327 + SM_b21130 0.26 -2.4 769,474 + SM_b21130 0.39 -1.4 769,474 + SM_b21130 0.39 +1.6 769,474 + SM_b21130 0.39 -0.9 769,474 + SM_b21130 0.39 +0.6 769,474 + SM_b21130 0.39 +0.8 769,475 - SM_b21130 0.39 -1.0 769,475 - SM_b21130 0.39 -2.2 770,285 + SM_b21131 0.14 -1.4 770,286 - SM_b21131 0.14 -0.6 770,286 - SM_b21131 0.14 -0.9 770,286 - SM_b21131 0.14 -0.0 770,287 + -0.9 770,288 - SM_b21131 0.14 -1.1 770,294 + SM_b21131 0.15 -1.3 770,294 + SM_b21131 0.15 +0.3 770,294 + SM_b21131 0.15 -1.5 770,294 + SM_b21131 0.15 -0.4 770,296 + SM_b21131 0.15 -0.4 770,342 + SM_b21131 0.20 -1.7 770,427 + SM_b21131 0.30 -1.8 770,428 - SM_b21131 0.30 -1.2 770,429 + SM_b21131 0.30 -1.5 770,611 + SM_b21131 0.51 -1.1 770,611 + SM_b21131 0.51 -1.4 770,612 - SM_b21131 0.51 -0.0 770,640 - SM_b21131 0.54 -0.6 771,008 + -0.2 771,009 - -0.0 771,012 - -0.0 771,012 - -0.4 771,020 - -0.6 771,038 + -1.4 771,044 + -1.1 771,044 + -0.4 771,230 + SM_b21132 0.23 +0.6 771,231 - SM_b21132 0.23 -0.8 771,510 - SM_b21132 0.56 -2.3 771,510 - SM_b21132 0.56 +0.6 771,908 - -1.8 771,908 - -0.2 771,908 - +0.8
Or see this region's nucleotide sequence