Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21116 and SM_b21117 are separated by 83 nucleotides SM_b21117 and SM_b21119 are separated by 250 nucleotides SM_b21119 and SM_b21120 overlap by 23 nucleotides SM_b21120 and SM_b21121 overlap by 8 nucleotides
SM_b21116: SM_b21116 - trifolitoxin biosynthesis protein, at 757,320 to 758,051
_b21116
SM_b21117: SM_b21117 - transcriptional regulator, at 758,135 to 758,593
_b21117
SM_b21119: SM_b21119 - gluconokinase, at 758,844 to 759,380
_b21119
SM_b21120: SM_b21120 - hypothetical protein, at 759,358 to 759,576
_b21120
SM_b21121: SM_b21121 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) <small>(from data)</small>, at 759,569 to 760,732
_b21121
Position (kb) 758
759
760 Strain fitness (log2 ratio) -2
-1
0
1
2 at 758.118 kb on + strand at 758.118 kb on + strand at 758.118 kb on + strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.119 kb on - strand at 758.405 kb on + strand, within SM_b21117 at 758.405 kb on + strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.406 kb on - strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.522 kb on + strand, within SM_b21117 at 758.523 kb on - strand, within SM_b21117 at 758.523 kb on - strand, within SM_b21117 at 758.576 kb on - strand at 758.598 kb on + strand at 758.599 kb on - strand at 758.599 kb on - strand at 758.625 kb on + strand at 758.625 kb on + strand at 758.626 kb on - strand at 758.632 kb on + strand at 758.634 kb on + strand at 758.634 kb on + strand at 758.635 kb on - strand at 758.706 kb on + strand at 758.849 kb on + strand at 758.849 kb on + strand at 758.850 kb on - strand at 758.850 kb on - strand at 758.857 kb on - strand at 759.301 kb on + strand, within SM_b21119 at 759.301 kb on + strand, within SM_b21119 at 759.301 kb on + strand, within SM_b21119 at 759.301 kb on + strand, within SM_b21119 at 759.301 kb on + strand, within SM_b21119 at 759.302 kb on - strand, within SM_b21119 at 759.469 kb on - strand, within SM_b21120 at 759.469 kb on - strand, within SM_b21120 at 759.469 kb on - strand, within SM_b21120 at 759.811 kb on - strand, within SM_b21121 at 759.811 kb on - strand, within SM_b21121 at 759.811 kb on - strand, within SM_b21121 at 759.843 kb on - strand, within SM_b21121 at 759.911 kb on + strand, within SM_b21121 at 759.911 kb on + strand, within SM_b21121 at 759.911 kb on + strand, within SM_b21121 at 759.912 kb on - strand, within SM_b21121 at 760.025 kb on + strand, within SM_b21121 at 760.026 kb on - strand, within SM_b21121 at 760.088 kb on + strand, within SM_b21121 at 760.088 kb on + strand, within SM_b21121 at 760.089 kb on - strand, within SM_b21121 at 760.288 kb on + strand, within SM_b21121 at 760.288 kb on + strand, within SM_b21121 at 760.288 kb on + strand, within SM_b21121 at 760.288 kb on + strand, within SM_b21121 at 760.288 kb on + strand, within SM_b21121 at 760.289 kb on - strand, within SM_b21121 at 760.289 kb on - strand, within SM_b21121 at 760.374 kb on - strand, within SM_b21121 at 760.374 kb on - strand, within SM_b21121 at 760.374 kb on - strand, within SM_b21121
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 758,118 + -0.4 758,118 + +0.7 758,118 + -0.1 758,119 - +0.2 758,119 - +0.0 758,119 - -0.4 758,119 - +0.3 758,119 - -0.1 758,119 - +0.1 758,119 - +0.5 758,119 - -0.5 758,119 - +0.0 758,405 + SM_b21117 0.59 -0.4 758,405 + SM_b21117 0.59 +0.4 758,406 - SM_b21117 0.59 -0.5 758,406 - SM_b21117 0.59 +0.6 758,406 - SM_b21117 0.59 -0.2 758,406 - SM_b21117 0.59 +0.4 758,406 - SM_b21117 0.59 -0.5 758,522 + SM_b21117 0.84 +0.6 758,522 + SM_b21117 0.84 +0.7 758,522 + SM_b21117 0.84 -0.0 758,523 - SM_b21117 0.85 -0.3 758,523 - SM_b21117 0.85 -0.4 758,576 - -0.3 758,598 + +0.9 758,599 - +0.6 758,599 - +0.2 758,625 + -0.1 758,625 + -0.9 758,626 - +0.8 758,632 + -0.2 758,634 + -1.3 758,634 + -0.5 758,635 - +0.0 758,706 + +0.3 758,849 + -1.4 758,849 + +0.9 758,850 - +0.2 758,850 - +0.4 758,857 - -0.4 759,301 + SM_b21119 0.85 +0.9 759,301 + SM_b21119 0.85 +0.3 759,301 + SM_b21119 0.85 +0.2 759,301 + SM_b21119 0.85 +0.2 759,301 + SM_b21119 0.85 +0.3 759,302 - SM_b21119 0.85 +0.4 759,469 - SM_b21120 0.51 -0.5 759,469 - SM_b21120 0.51 +0.0 759,469 - SM_b21120 0.51 +0.8 759,811 - SM_b21121 0.21 -0.3 759,811 - SM_b21121 0.21 -0.0 759,811 - SM_b21121 0.21 +2.2 759,843 - SM_b21121 0.24 -0.0 759,911 + SM_b21121 0.29 +0.4 759,911 + SM_b21121 0.29 -0.0 759,911 + SM_b21121 0.29 +0.6 759,912 - SM_b21121 0.29 -0.2 760,025 + SM_b21121 0.39 +0.1 760,026 - SM_b21121 0.39 +0.0 760,088 + SM_b21121 0.45 +0.1 760,088 + SM_b21121 0.45 +0.6 760,089 - SM_b21121 0.45 -0.5 760,288 + SM_b21121 0.62 -2.5 760,288 + SM_b21121 0.62 -1.9 760,288 + SM_b21121 0.62 -0.9 760,288 + SM_b21121 0.62 +0.1 760,288 + SM_b21121 0.62 -0.1 760,289 - SM_b21121 0.62 +0.1 760,289 - SM_b21121 0.62 -1.1 760,374 - SM_b21121 0.69 -1.1 760,374 - SM_b21121 0.69 +0.2 760,374 - SM_b21121 0.69 +0.1
Or see this region's nucleotide sequence