Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20842 and SM_b20843 are separated by 3 nucleotides SM_b20843 and SM_b21013 are separated by 425 nucleotides
SM_b20842: SM_b20842 - TonB-dependent receptor protein, at 633,438 to 634,667
_b20842
SM_b20843: SM_b20843 - hypothetical protein, at 634,671 to 636,197
_b20843
SM_b21013: SM_b21013 - hypothetical protein, at 636,623 to 637,090
_b21013
Position (kb) 634
635
636
637 Strain fitness (log2 ratio) -2
-1
0
1
2 at 633.730 kb on - strand, within SM_b20842 at 633.730 kb on - strand, within SM_b20842 at 633.745 kb on - strand, within SM_b20842 at 633.910 kb on + strand, within SM_b20842 at 633.911 kb on - strand, within SM_b20842 at 633.911 kb on - strand, within SM_b20842 at 634.046 kb on + strand, within SM_b20842 at 634.046 kb on + strand, within SM_b20842 at 634.047 kb on - strand, within SM_b20842 at 634.047 kb on - strand, within SM_b20842 at 634.102 kb on + strand, within SM_b20842 at 634.102 kb on + strand, within SM_b20842 at 634.103 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.151 kb on - strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.258 kb on + strand, within SM_b20842 at 634.263 kb on + strand, within SM_b20842 at 634.291 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.307 kb on - strand, within SM_b20842 at 634.439 kb on - strand, within SM_b20842 at 634.439 kb on - strand, within SM_b20842 at 634.448 kb on - strand, within SM_b20842 at 634.448 kb on - strand, within SM_b20842 at 634.571 kb on + strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.627 kb on - strand at 634.673 kb on - strand at 634.712 kb on - strand at 634.799 kb on - strand at 634.813 kb on + strand at 634.814 kb on - strand at 634.814 kb on - strand at 634.867 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 634.871 kb on - strand, within SM_b20843 at 635.273 kb on - strand, within SM_b20843 at 635.479 kb on + strand, within SM_b20843 at 635.568 kb on - strand, within SM_b20843 at 635.867 kb on + strand, within SM_b20843 at 635.944 kb on + strand, within SM_b20843 at 635.953 kb on + strand, within SM_b20843 at 635.992 kb on + strand, within SM_b20843 at 636.117 kb on - strand at 636.368 kb on - strand at 636.508 kb on + strand at 636.517 kb on + strand at 636.517 kb on + strand at 636.518 kb on - strand at 636.535 kb on - strand at 636.535 kb on - strand at 636.719 kb on + strand, within SM_b21013 at 636.753 kb on + strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 636.754 kb on - strand, within SM_b21013 at 637.081 kb on + strand at 637.082 kb on - strand at 637.082 kb on - strand at 637.090 kb on + strand at 637.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 633,730 - SM_b20842 0.24 +1.6 633,730 - SM_b20842 0.24 +0.4 633,745 - SM_b20842 0.25 +0.9 633,910 + SM_b20842 0.38 -0.2 633,911 - SM_b20842 0.38 +0.0 633,911 - SM_b20842 0.38 -2.1 634,046 + SM_b20842 0.49 +0.3 634,046 + SM_b20842 0.49 +0.9 634,047 - SM_b20842 0.50 +0.1 634,047 - SM_b20842 0.50 +0.0 634,102 + SM_b20842 0.54 +0.1 634,102 + SM_b20842 0.54 -0.5 634,103 - SM_b20842 0.54 -0.5 634,151 - SM_b20842 0.58 -0.7 634,151 - SM_b20842 0.58 +0.7 634,151 - SM_b20842 0.58 -0.9 634,258 + SM_b20842 0.67 -0.4 634,258 + SM_b20842 0.67 +1.3 634,258 + SM_b20842 0.67 +1.6 634,258 + SM_b20842 0.67 +0.1 634,263 + SM_b20842 0.67 -0.3 634,291 - SM_b20842 0.69 +0.0 634,307 - SM_b20842 0.71 +0.3 634,307 - SM_b20842 0.71 -0.3 634,307 - SM_b20842 0.71 +0.7 634,307 - SM_b20842 0.71 +0.2 634,307 - SM_b20842 0.71 -1.7 634,439 - SM_b20842 0.81 -0.6 634,439 - SM_b20842 0.81 -0.4 634,448 - SM_b20842 0.82 +0.5 634,448 - SM_b20842 0.82 -0.4 634,571 + +0.1 634,627 - -0.3 634,627 - +0.6 634,627 - -0.3 634,673 - +0.0 634,712 - -0.1 634,799 - -0.3 634,813 + +1.0 634,814 - +0.5 634,814 - +0.4 634,867 - SM_b20843 0.13 +0.5 634,871 - SM_b20843 0.13 +1.1 634,871 - SM_b20843 0.13 +0.5 634,871 - SM_b20843 0.13 -0.1 634,871 - SM_b20843 0.13 +0.9 635,273 - SM_b20843 0.39 +0.2 635,479 + SM_b20843 0.53 -0.2 635,568 - SM_b20843 0.59 +0.5 635,867 + SM_b20843 0.78 +0.5 635,944 + SM_b20843 0.83 +0.2 635,953 + SM_b20843 0.84 -1.1 635,992 + SM_b20843 0.87 -0.9 636,117 - -1.0 636,368 - -0.3 636,508 + +0.2 636,517 + +1.9 636,517 + +0.6 636,518 - -0.4 636,535 - +0.6 636,535 - +0.1 636,719 + SM_b21013 0.21 -0.6 636,753 + SM_b21013 0.28 +0.8 636,754 - SM_b21013 0.28 +0.0 636,754 - SM_b21013 0.28 -1.0 636,754 - SM_b21013 0.28 -0.0 637,081 + -1.0 637,082 - -0.1 637,082 - -0.5 637,090 + +0.1 637,091 - +0.2
Or see this region's nucleotide sequence