Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20679 and SM_b20680 are separated by 5 nucleotides SM_b20680 and SM_b20681 are separated by 54 nucleotides
SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592
_b20679
SM_b20680: SM_b20680 - hydroxypyruvate isomerase, at 1,481,598 to 1,482,413
_b20680
SM_b20681: SM_b20681 - glyoxylate carboligase, at 1,482,468 to 1,484,252
_b20681
Position (kb)
1481
1482
1483 Strain fitness (log2 ratio)
-2
-1
0
1 at 1480.710 kb on - strand at 1481.081 kb on + strand, within SM_b20679 at 1481.245 kb on - strand, within SM_b20679 at 1481.246 kb on + strand, within SM_b20679 at 1481.247 kb on - strand, within SM_b20679 at 1481.345 kb on + strand, within SM_b20679 at 1481.345 kb on + strand, within SM_b20679 at 1481.346 kb on - strand, within SM_b20679 at 1481.349 kb on - strand, within SM_b20679 at 1481.391 kb on + strand, within SM_b20679 at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.599 kb on + strand at 1481.600 kb on - strand at 1481.600 kb on - strand at 1481.600 kb on - strand at 1481.693 kb on - strand, within SM_b20680 at 1481.753 kb on - strand, within SM_b20680 at 1481.753 kb on - strand, within SM_b20680 at 1481.805 kb on + strand, within SM_b20680 at 1481.836 kb on + strand, within SM_b20680 at 1481.837 kb on - strand, within SM_b20680 at 1481.875 kb on + strand, within SM_b20680 at 1481.885 kb on - strand, within SM_b20680 at 1481.900 kb on + strand, within SM_b20680 at 1482.076 kb on - strand, within SM_b20680 at 1482.136 kb on + strand, within SM_b20680 at 1482.137 kb on - strand, within SM_b20680 at 1482.727 kb on + strand, within SM_b20681 at 1482.829 kb on + strand at 1482.857 kb on - strand, within SM_b20681 at 1482.857 kb on - strand, within SM_b20681 at 1482.913 kb on + strand, within SM_b20681 at 1482.914 kb on - strand, within SM_b20681 at 1483.033 kb on + strand, within SM_b20681 at 1483.088 kb on - strand, within SM_b20681 at 1483.088 kb on - strand, within SM_b20681 at 1483.126 kb on + strand, within SM_b20681 at 1483.378 kb on + strand, within SM_b20681 at 1483.378 kb on + strand, within SM_b20681
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 1,480,710 - -0.1 1,481,081 + SM_b20679 0.42 -0.3 1,481,245 - SM_b20679 0.61 -0.3 1,481,246 + SM_b20679 0.61 -0.8 1,481,247 - SM_b20679 0.61 -2.1 1,481,345 + SM_b20679 0.72 +0.4 1,481,345 + SM_b20679 0.72 -1.8 1,481,346 - SM_b20679 0.72 -0.7 1,481,349 - SM_b20679 0.72 +0.1 1,481,391 + SM_b20679 0.77 -1.0 1,481,583 + +0.4 1,481,583 + -0.8 1,481,583 + -0.1 1,481,599 + +0.1 1,481,599 + +0.0 1,481,599 + +0.5 1,481,599 + -0.7 1,481,600 - +0.3 1,481,600 - +0.1 1,481,600 - -0.2 1,481,693 - SM_b20680 0.12 +1.1 1,481,753 - SM_b20680 0.19 +0.6 1,481,753 - SM_b20680 0.19 +0.3 1,481,805 + SM_b20680 0.25 +0.2 1,481,836 + SM_b20680 0.29 -0.5 1,481,837 - SM_b20680 0.29 +0.1 1,481,875 + SM_b20680 0.34 +1.0 1,481,885 - SM_b20680 0.35 +1.7 1,481,900 + SM_b20680 0.37 +0.9 1,482,076 - SM_b20680 0.59 +0.3 1,482,136 + SM_b20680 0.66 +0.6 1,482,137 - SM_b20680 0.66 +1.4 1,482,727 + SM_b20681 0.15 +0.2 1,482,829 + +0.9 1,482,857 - SM_b20681 0.22 -0.4 1,482,857 - SM_b20681 0.22 +1.1 1,482,913 + SM_b20681 0.25 +0.3 1,482,914 - SM_b20681 0.25 -0.6 1,483,033 + SM_b20681 0.32 -1.2 1,483,088 - SM_b20681 0.35 -0.0 1,483,088 - SM_b20681 0.35 +0.0 1,483,126 + SM_b20681 0.37 -0.2 1,483,378 + SM_b20681 0.51 -0.6 1,483,378 + SM_b20681 0.51 +0.0
Or see this region's nucleotide sequence