Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20272 and SM_b20273 are separated by 72 nucleotides SM_b20273 and SM_b20274 are separated by 255 nucleotides SM_b20274 and SM_b20275 are separated by 177 nucleotides
SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586
_b20272
SM_b20273: SM_b20273 - hypothetical protein, at 278,659 to 278,844
_b20273
SM_b20274: SM_b20274 - hypothetical protein, at 279,100 to 279,285
_b20274
SM_b20275: SM_b20275 - hypothetical protein, at 279,463 to 280,323
_b20275
Position (kb) 278
279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 277.782 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.849 kb on - strand, within SM_b20272 at 277.855 kb on + strand, within SM_b20272 at 277.856 kb on - strand, within SM_b20272 at 277.883 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272 at 278.030 kb on + strand, within SM_b20272 at 278.031 kb on - strand, within SM_b20272 at 278.095 kb on + strand, within SM_b20272 at 278.095 kb on + strand, within SM_b20272 at 278.323 kb on + strand, within SM_b20272 at 278.324 kb on - strand, within SM_b20272 at 278.324 kb on - strand, within SM_b20272 at 278.461 kb on + strand, within SM_b20272 at 278.461 kb on + strand, within SM_b20272 at 278.462 kb on - strand, within SM_b20272 at 278.479 kb on + strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.491 kb on + strand at 278.492 kb on - strand at 278.667 kb on + strand at 278.725 kb on + strand, within SM_b20273 at 278.727 kb on + strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 279.045 kb on - strand at 279.102 kb on - strand at 279.138 kb on - strand, within SM_b20274 at 279.189 kb on - strand, within SM_b20274 at 279.206 kb on - strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.227 kb on - strand, within SM_b20274 at 279.334 kb on - strand at 279.783 kb on + strand, within SM_b20275 at 279.797 kb on - strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.800 kb on + strand, within SM_b20275 at 279.801 kb on - strand, within SM_b20275 at 279.801 kb on - strand, within SM_b20275
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 277,782 - SM_b20272 0.33 -0.2 277,782 - SM_b20272 0.33 -0.7 277,849 - SM_b20272 0.39 +0.2 277,855 + SM_b20272 0.39 -0.2 277,856 - SM_b20272 0.40 +0.0 277,883 + SM_b20272 0.42 +0.1 277,953 + SM_b20272 0.48 -0.1 277,953 + SM_b20272 0.48 +0.2 278,030 + SM_b20272 0.54 -0.1 278,031 - SM_b20272 0.54 -0.6 278,095 + SM_b20272 0.59 +0.3 278,095 + SM_b20272 0.59 +1.0 278,323 + SM_b20272 0.78 +0.8 278,324 - SM_b20272 0.78 -0.8 278,324 - SM_b20272 0.78 -1.8 278,461 + SM_b20272 0.90 +1.0 278,461 + SM_b20272 0.90 +2.1 278,462 - SM_b20272 0.90 -1.8 278,479 + +0.1 278,480 - +0.6 278,480 - +1.1 278,480 - +0.3 278,491 + +0.1 278,492 - +0.0 278,667 + +0.9 278,725 + SM_b20273 0.35 -0.4 278,727 + SM_b20273 0.37 -1.0 278,728 - SM_b20273 0.37 -0.9 278,728 - SM_b20273 0.37 -0.6 279,045 - -0.2 279,102 - -0.9 279,138 - SM_b20274 0.20 -0.2 279,189 - SM_b20274 0.48 -0.2 279,206 - SM_b20274 0.57 -0.7 279,217 + SM_b20274 0.63 +0.2 279,217 + SM_b20274 0.63 +0.4 279,227 - SM_b20274 0.68 -0.2 279,334 - +0.1 279,783 + SM_b20275 0.37 -0.1 279,797 - SM_b20275 0.39 -1.0 279,800 + SM_b20275 0.39 +0.2 279,800 + SM_b20275 0.39 +0.4 279,800 + SM_b20275 0.39 +1.6 279,801 - SM_b20275 0.39 +0.2 279,801 - SM_b20275 0.39 -1.1
Or see this region's nucleotide sequence