Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20259 and SM_b20260 are separated by 47 nucleotides SM_b20260 and SM_b20261 are separated by 63 nucleotides
SM_b20259: SM_b20259 - dihydrodipicolinate synthase, at 264,068 to 265,030
_b20259
SM_b20260: SM_b20260 - hypothetical protein, at 265,078 to 265,470
_b20260
SM_b20261: SM_b20261 - malate dehydrogenase, at 265,534 to 266,571
_b20261
Position (kb) 265
266 Strain fitness (log2 ratio) -2
-1
0
1 at 264.200 kb on + strand, within SM_b20259 at 264.270 kb on + strand, within SM_b20259 at 264.271 kb on - strand, within SM_b20259 at 264.376 kb on - strand, within SM_b20259 at 264.376 kb on - strand, within SM_b20259 at 264.439 kb on - strand, within SM_b20259 at 264.439 kb on - strand, within SM_b20259 at 264.473 kb on + strand, within SM_b20259 at 264.474 kb on - strand, within SM_b20259 at 264.474 kb on - strand, within SM_b20259 at 264.485 kb on + strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.486 kb on - strand, within SM_b20259 at 264.488 kb on + strand, within SM_b20259 at 264.711 kb on + strand, within SM_b20259 at 264.854 kb on + strand, within SM_b20259 at 264.980 kb on + strand at 264.980 kb on + strand at 265.020 kb on - strand at 265.142 kb on - strand, within SM_b20260 at 265.290 kb on - strand, within SM_b20260 at 265.340 kb on + strand, within SM_b20260 at 265.341 kb on - strand, within SM_b20260 at 265.341 kb on - strand, within SM_b20260 at 265.799 kb on + strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 265.800 kb on - strand, within SM_b20261 at 266.045 kb on + strand, within SM_b20261 at 266.046 kb on - strand, within SM_b20261 at 266.327 kb on - strand, within SM_b20261
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 264,200 + SM_b20259 0.14 -0.8 264,270 + SM_b20259 0.21 +0.9 264,271 - SM_b20259 0.21 +0.3 264,376 - SM_b20259 0.32 +0.4 264,376 - SM_b20259 0.32 +0.6 264,439 - SM_b20259 0.39 +0.4 264,439 - SM_b20259 0.39 -0.9 264,473 + SM_b20259 0.42 -0.1 264,474 - SM_b20259 0.42 -0.0 264,474 - SM_b20259 0.42 +0.2 264,485 + SM_b20259 0.43 -0.4 264,486 - SM_b20259 0.43 -0.5 264,486 - SM_b20259 0.43 -0.4 264,486 - SM_b20259 0.43 -0.9 264,488 + SM_b20259 0.44 +0.3 264,711 + SM_b20259 0.67 +0.2 264,854 + SM_b20259 0.82 -0.8 264,980 + -0.3 264,980 + -0.6 265,020 - +0.6 265,142 - SM_b20260 0.16 -1.1 265,290 - SM_b20260 0.54 -0.5 265,340 + SM_b20260 0.67 -1.6 265,341 - SM_b20260 0.67 +0.3 265,341 - SM_b20260 0.67 -2.3 265,799 + SM_b20261 0.26 -0.1 265,800 - SM_b20261 0.26 -1.0 265,800 - SM_b20261 0.26 -2.2 265,800 - SM_b20261 0.26 +1.0 266,045 + SM_b20261 0.49 -0.5 266,046 - SM_b20261 0.49 +0.0 266,327 - SM_b20261 0.76 -1.2
Or see this region's nucleotide sequence