Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20250 and SM_b20251 are separated by 71 nucleotides SM_b20251 and SM_b20252 overlap by 88 nucleotides SM_b20252 and SM_b20253 are separated by 46 nucleotides
SM_b20250: SM_b20250 - hypothetical protein, at 256,338 to 256,937
_b20250
SM_b20251: SM_b20251 - hypothetical protein, at 257,009 to 257,971
_b20251
SM_b20252: SM_b20252 - hypothetical protein, at 257,884 to 259,248
_b20252
SM_b20253: SM_b20253 - hypothetical protein, at 259,295 to 260,200
_b20253
Position (kb) 257
258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 257.004 kb on + strand at 257.004 kb on + strand at 257.005 kb on - strand at 257.099 kb on - strand at 257.198 kb on - strand, within SM_b20251 at 257.525 kb on + strand, within SM_b20251 at 257.526 kb on - strand, within SM_b20251 at 257.526 kb on - strand, within SM_b20251 at 257.608 kb on - strand, within SM_b20251 at 257.667 kb on + strand, within SM_b20251 at 257.678 kb on + strand, within SM_b20251 at 257.678 kb on + strand, within SM_b20251 at 257.984 kb on + strand at 257.985 kb on - strand at 258.018 kb on - strand at 258.527 kb on + strand, within SM_b20252 at 258.749 kb on + strand, within SM_b20252 at 258.806 kb on + strand, within SM_b20252 at 258.858 kb on - strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.895 kb on + strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 258.896 kb on - strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.010 kb on + strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.011 kb on - strand, within SM_b20252 at 259.043 kb on + strand, within SM_b20252 at 259.317 kb on + strand at 259.317 kb on + strand at 259.479 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.640 kb on + strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.641 kb on - strand, within SM_b20253 at 259.719 kb on + strand, within SM_b20253 at 259.719 kb on + strand, within SM_b20253 at 259.727 kb on + strand, within SM_b20253 at 259.727 kb on + strand, within SM_b20253 at 259.729 kb on + strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.730 kb on - strand, within SM_b20253 at 259.732 kb on - strand, within SM_b20253 at 259.751 kb on - strand, within SM_b20253 at 259.899 kb on + strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.900 kb on - strand, within SM_b20253 at 259.948 kb on - strand, within SM_b20253 at 260.053 kb on + strand, within SM_b20253 at 260.152 kb on - strand at 260.200 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 257,004 + +0.5 257,004 + -0.2 257,005 - +0.5 257,099 - -1.2 257,198 - SM_b20251 0.20 -0.7 257,525 + SM_b20251 0.54 +0.4 257,526 - SM_b20251 0.54 +0.1 257,526 - SM_b20251 0.54 -0.7 257,608 - SM_b20251 0.62 -0.4 257,667 + SM_b20251 0.68 -2.1 257,678 + SM_b20251 0.69 -0.7 257,678 + SM_b20251 0.69 -0.7 257,984 + +1.4 257,985 - +0.8 258,018 - -0.2 258,527 + SM_b20252 0.47 -0.3 258,749 + SM_b20252 0.63 -0.4 258,806 + SM_b20252 0.68 +0.3 258,858 - SM_b20252 0.71 +1.9 258,895 + SM_b20252 0.74 +0.1 258,895 + SM_b20252 0.74 -0.0 258,895 + SM_b20252 0.74 -0.1 258,895 + SM_b20252 0.74 -0.1 258,895 + SM_b20252 0.74 +0.0 258,895 + SM_b20252 0.74 -0.2 258,895 + SM_b20252 0.74 -2.5 258,895 + SM_b20252 0.74 -0.0 258,895 + SM_b20252 0.74 +0.3 258,896 - SM_b20252 0.74 +0.2 258,896 - SM_b20252 0.74 -0.2 258,896 - SM_b20252 0.74 +0.9 259,010 + SM_b20252 0.82 +0.2 259,010 + SM_b20252 0.82 -0.3 259,010 + SM_b20252 0.82 +0.4 259,011 - SM_b20252 0.83 -0.6 259,011 - SM_b20252 0.83 +0.0 259,011 - SM_b20252 0.83 -0.2 259,043 + SM_b20252 0.85 +0.2 259,317 + +0.4 259,317 + -1.0 259,479 + SM_b20253 0.20 -0.3 259,640 + SM_b20253 0.38 -1.0 259,640 + SM_b20253 0.38 -0.5 259,640 + SM_b20253 0.38 +0.2 259,640 + SM_b20253 0.38 +0.2 259,640 + SM_b20253 0.38 +0.3 259,640 + SM_b20253 0.38 -0.4 259,640 + SM_b20253 0.38 -0.3 259,641 - SM_b20253 0.38 -0.7 259,641 - SM_b20253 0.38 -0.6 259,641 - SM_b20253 0.38 -0.0 259,719 + SM_b20253 0.47 -0.4 259,719 + SM_b20253 0.47 +0.0 259,727 + SM_b20253 0.48 +0.3 259,727 + SM_b20253 0.48 -0.4 259,729 + SM_b20253 0.48 +0.3 259,730 - SM_b20253 0.48 +0.2 259,730 - SM_b20253 0.48 -1.0 259,730 - SM_b20253 0.48 +0.3 259,732 - SM_b20253 0.48 -0.1 259,751 - SM_b20253 0.50 -0.8 259,899 + SM_b20253 0.67 -0.3 259,900 - SM_b20253 0.67 -0.8 259,900 - SM_b20253 0.67 +0.6 259,948 - SM_b20253 0.72 -2.3 260,053 + SM_b20253 0.84 -1.5 260,152 - -0.6 260,200 + -0.5
Or see this region's nucleotide sequence