Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20249 and SM_b20250 overlap by 4 nucleotides SM_b20250 and SM_b20251 are separated by 71 nucleotides
SM_b20249: SM_b20249 - myo-inositol-1-phosphate synthase, at 255,238 to 256,341
_b20249
SM_b20250: SM_b20250 - hypothetical protein, at 256,338 to 256,937
_b20250
SM_b20251: SM_b20251 - hypothetical protein, at 257,009 to 257,971
_b20251
SM_b20252: SM_b20252 - hypothetical protein, at 257,884 to 259,248
_b20252
Position (kb) 256
257 Strain fitness (log2 ratio) -2
-1
0
1 at 255.457 kb on + strand, within SM_b20249 at 255.458 kb on - strand, within SM_b20249 at 255.640 kb on + strand, within SM_b20249 at 255.641 kb on - strand, within SM_b20249 at 255.676 kb on + strand, within SM_b20249 at 255.801 kb on - strand, within SM_b20249 at 255.872 kb on + strand, within SM_b20249 at 255.873 kb on - strand, within SM_b20249 at 255.873 kb on - strand, within SM_b20249 at 255.884 kb on - strand, within SM_b20249 at 255.906 kb on + strand, within SM_b20249 at 256.067 kb on - strand, within SM_b20249 at 256.067 kb on - strand, within SM_b20249 at 256.068 kb on + strand, within SM_b20249 at 256.234 kb on + strand at 256.238 kb on + strand at 256.417 kb on + strand, within SM_b20250 at 256.494 kb on + strand, within SM_b20250 at 256.494 kb on + strand, within SM_b20250 at 256.494 kb on + strand, within SM_b20250 at 256.664 kb on + strand, within SM_b20250 at 256.664 kb on + strand, within SM_b20250 at 257.004 kb on + strand at 257.004 kb on + strand at 257.005 kb on - strand at 257.099 kb on - strand at 257.198 kb on - strand, within SM_b20251 at 257.525 kb on + strand, within SM_b20251 at 257.526 kb on - strand, within SM_b20251 at 257.526 kb on - strand, within SM_b20251 at 257.608 kb on - strand, within SM_b20251 at 257.667 kb on + strand, within SM_b20251 at 257.678 kb on + strand, within SM_b20251 at 257.678 kb on + strand, within SM_b20251
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 255,457 + SM_b20249 0.20 -0.0 255,458 - SM_b20249 0.20 +0.7 255,640 + SM_b20249 0.36 +1.0 255,641 - SM_b20249 0.37 -0.2 255,676 + SM_b20249 0.40 -0.0 255,801 - SM_b20249 0.51 +0.0 255,872 + SM_b20249 0.57 -0.4 255,873 - SM_b20249 0.58 +1.1 255,873 - SM_b20249 0.58 -0.7 255,884 - SM_b20249 0.59 -2.5 255,906 + SM_b20249 0.61 +0.6 256,067 - SM_b20249 0.75 +0.6 256,067 - SM_b20249 0.75 -0.2 256,068 + SM_b20249 0.75 -0.7 256,234 + -0.8 256,238 + -0.4 256,417 + SM_b20250 0.13 -0.3 256,494 + SM_b20250 0.26 -0.2 256,494 + SM_b20250 0.26 +0.2 256,494 + SM_b20250 0.26 +0.5 256,664 + SM_b20250 0.54 -0.5 256,664 + SM_b20250 0.54 +0.0 257,004 + +0.5 257,004 + -0.2 257,005 - +0.5 257,099 - -1.2 257,198 - SM_b20251 0.20 -0.7 257,525 + SM_b20251 0.54 +0.4 257,526 - SM_b20251 0.54 +0.1 257,526 - SM_b20251 0.54 -0.7 257,608 - SM_b20251 0.62 -0.4 257,667 + SM_b20251 0.68 -2.1 257,678 + SM_b20251 0.69 -0.7 257,678 + SM_b20251 0.69 -0.7
Or see this region's nucleotide sequence