Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20213 and SM_b20214 are separated by 263 nucleotides SM_b20214 and SM_b20215 are separated by 62 nucleotides
SM_b20213: SM_b20213 - hypothetical protein, at 219,980 to 221,863
_b20213
SM_b20214: SM_b20214 - oxidoreductase, at 222,127 to 222,930
_b20214
SM_b20215: SM_b20215 - transcriptional regulator, at 222,993 to 223,973
_b20215
Position (kb) 222
223 Strain fitness (log2 ratio) -1
0
1 at 221.225 kb on + strand, within SM_b20213 at 221.226 kb on - strand, within SM_b20213 at 221.226 kb on - strand, within SM_b20213 at 221.241 kb on - strand, within SM_b20213 at 221.316 kb on + strand, within SM_b20213 at 221.316 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.435 kb on + strand, within SM_b20213 at 221.436 kb on - strand, within SM_b20213 at 221.445 kb on - strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.504 kb on + strand, within SM_b20213 at 221.766 kb on - strand at 221.776 kb on - strand at 221.902 kb on + strand at 222.034 kb on + strand at 222.091 kb on - strand at 222.191 kb on - strand at 222.276 kb on + strand, within SM_b20214 at 222.359 kb on + strand, within SM_b20214 at 222.360 kb on - strand, within SM_b20214 at 222.493 kb on + strand, within SM_b20214 at 222.494 kb on - strand, within SM_b20214 at 222.516 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.589 kb on + strand, within SM_b20214 at 222.666 kb on - strand, within SM_b20214 at 222.666 kb on - strand, within SM_b20214 at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.851 kb on - strand at 222.928 kb on + strand at 222.928 kb on + strand at 222.941 kb on - strand at 223.032 kb on - strand at 223.032 kb on - strand at 223.084 kb on + strand at 223.129 kb on - strand, within SM_b20215 at 223.135 kb on + strand, within SM_b20215 at 223.136 kb on - strand, within SM_b20215 at 223.193 kb on + strand, within SM_b20215 at 223.194 kb on - strand, within SM_b20215 at 223.218 kb on + strand, within SM_b20215 at 223.430 kb on + strand, within SM_b20215 at 223.534 kb on - strand, within SM_b20215 at 223.666 kb on - strand, within SM_b20215
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 221,225 + SM_b20213 0.66 -0.9 221,226 - SM_b20213 0.66 -0.2 221,226 - SM_b20213 0.66 -0.2 221,241 - SM_b20213 0.67 +1.7 221,316 + SM_b20213 0.71 -0.2 221,316 + SM_b20213 0.71 -0.1 221,435 + SM_b20213 0.77 -0.0 221,435 + SM_b20213 0.77 +0.5 221,435 + SM_b20213 0.77 +0.5 221,436 - SM_b20213 0.77 -1.3 221,445 - SM_b20213 0.78 -0.6 221,504 + SM_b20213 0.81 -0.3 221,504 + SM_b20213 0.81 -0.1 221,504 + SM_b20213 0.81 +0.7 221,766 - -0.5 221,776 - -0.1 221,902 + -0.2 222,034 + +0.9 222,091 - +0.3 222,191 - +0.0 222,276 + SM_b20214 0.19 -0.3 222,359 + SM_b20214 0.29 -0.3 222,360 - SM_b20214 0.29 +0.8 222,493 + SM_b20214 0.46 +1.5 222,494 - SM_b20214 0.46 +1.0 222,516 - SM_b20214 0.48 +0.4 222,544 - SM_b20214 0.52 -0.2 222,544 - SM_b20214 0.52 +1.7 222,544 - SM_b20214 0.52 -0.2 222,589 + SM_b20214 0.57 -0.0 222,666 - SM_b20214 0.67 -1.7 222,666 - SM_b20214 0.67 +1.7 222,850 + -0.1 222,850 + -0.4 222,850 + +0.3 222,850 + +0.1 222,850 + +0.1 222,851 - +1.2 222,928 + -0.1 222,928 + +0.8 222,941 - +0.1 223,032 - +0.3 223,032 - +1.0 223,084 + +0.1 223,129 - SM_b20215 0.14 +0.1 223,135 + SM_b20215 0.14 -1.0 223,136 - SM_b20215 0.15 -0.6 223,193 + SM_b20215 0.20 +0.0 223,194 - SM_b20215 0.20 +0.2 223,218 + SM_b20215 0.23 +0.3 223,430 + SM_b20215 0.45 -0.3 223,534 - SM_b20215 0.55 -1.1 223,666 - SM_b20215 0.69 +0.1
Or see this region's nucleotide sequence