Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20181 and SM_b20182 overlap by 26 nucleotides SM_b20182 and SM_b20183 overlap by 4 nucleotides SM_b20183 and SM_b20184 overlap by 4 nucleotides
SM_b20181: SM_b20181 - ABC transporter substrate-binding protein, at 198,276 to 199,247
_b20181
SM_b20182: SM_b20182 - ABC transporter, at 199,222 to 200,001
_b20182
SM_b20183: SM_b20183 - ABC transporter ATP-binding protein, at 199,998 to 200,621
_b20183
SM_b20184: SM_b20184 - ABC transporter ATP-binding protein, at 200,618 to 201,346
_b20184
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1 at 198.400 kb on + strand, within SM_b20181 at 198.401 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.568 kb on - strand, within SM_b20181 at 198.711 kb on + strand, within SM_b20181 at 198.917 kb on + strand, within SM_b20181 at 198.933 kb on + strand, within SM_b20181 at 198.933 kb on + strand, within SM_b20181 at 198.987 kb on + strand, within SM_b20181 at 199.245 kb on + strand at 199.272 kb on - strand at 199.409 kb on - strand, within SM_b20182 at 199.532 kb on + strand, within SM_b20182 at 199.579 kb on + strand, within SM_b20182 at 199.579 kb on + strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.580 kb on - strand, within SM_b20182 at 199.806 kb on - strand, within SM_b20182 at 199.873 kb on + strand, within SM_b20182 at 199.910 kb on - strand, within SM_b20182 at 199.910 kb on - strand, within SM_b20182 at 200.421 kb on + strand, within SM_b20183 at 200.582 kb on + strand at 200.584 kb on + strand at 200.585 kb on - strand at 200.585 kb on - strand at 200.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 198,400 + SM_b20181 0.13 -0.0 198,401 - SM_b20181 0.13 +0.8 198,568 - SM_b20181 0.30 -0.3 198,568 - SM_b20181 0.30 +0.2 198,711 + SM_b20181 0.45 +0.1 198,917 + SM_b20181 0.66 -0.1 198,933 + SM_b20181 0.68 +0.6 198,933 + SM_b20181 0.68 -0.4 198,987 + SM_b20181 0.73 -0.1 199,245 + -1.5 199,272 - -0.9 199,409 - SM_b20182 0.24 +0.1 199,532 + SM_b20182 0.40 +1.3 199,579 + SM_b20182 0.46 +1.7 199,579 + SM_b20182 0.46 +0.5 199,580 - SM_b20182 0.46 +0.7 199,580 - SM_b20182 0.46 -0.7 199,580 - SM_b20182 0.46 -0.2 199,580 - SM_b20182 0.46 +0.1 199,806 - SM_b20182 0.75 +0.3 199,873 + SM_b20182 0.83 +0.7 199,910 - SM_b20182 0.88 -2.1 199,910 - SM_b20182 0.88 -0.6 200,421 + SM_b20183 0.68 -0.2 200,582 + +0.3 200,584 + +0.1 200,585 - -0.1 200,585 - +0.2 200,585 - -0.2
Or see this region's nucleotide sequence