Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20117 and SM_b20118 are separated by 480 nucleotides SM_b20118 and SM_b20119 are separated by 22 nucleotides SM_b20119 and SM_b22004 overlap by 20 nucleotides SM_b22004 and SM_b20121 overlap by 56 nucleotides SM_b20121 and SM_b20122 are separated by 181 nucleotides
SM_b20117: SM_b20117 - sugar transferase, at 130,586 to 131,686
_b20117
SM_b20118: SM_b20118 - hypothetical protein, at 132,167 to 132,586
_b20118
SM_b20119: SM_b20119 - hypothetical protein, at 132,609 to 132,965
_b20119
SM_b22004: SM_b22004 - plasmid stabilization system protein, at 132,946 to 133,338
_b22004
SM_b20121: SM_b20121 - hypothetical protein, at 133,283 to 133,558
_b20121
SM_b20122: SM_b20122 - hypothetical protein, at 133,740 to 134,075
_b20122
Position (kb) 132
133 Strain fitness (log2 ratio) -2
-1
0
1 at 131.679 kb on - strand at 131.765 kb on + strand at 131.766 kb on - strand at 131.766 kb on - strand at 131.766 kb on - strand at 132.010 kb on + strand at 132.010 kb on + strand at 132.010 kb on + strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.097 kb on - strand at 132.131 kb on + strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.139 kb on + strand at 132.139 kb on + strand at 132.140 kb on - strand at 132.179 kb on + strand at 132.180 kb on - strand at 132.180 kb on - strand at 132.295 kb on - strand, within SM_b20118 at 132.313 kb on - strand, within SM_b20118 at 132.313 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.374 kb on - strand, within SM_b20118 at 132.392 kb on + strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.443 kb on - strand, within SM_b20118 at 132.498 kb on + strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.508 kb on + strand, within SM_b20118 at 132.509 kb on - strand, within SM_b20118 at 132.611 kb on - strand at 132.848 kb on + strand, within SM_b20119 at 133.022 kb on + strand, within SM_b22004 at 133.025 kb on + strand, within SM_b22004 at 133.166 kb on + strand, within SM_b22004 at 133.167 kb on - strand, within SM_b22004 at 133.188 kb on - strand, within SM_b22004 at 133.368 kb on - strand, within SM_b20121 at 133.476 kb on + strand, within SM_b20121 at 133.609 kb on - strand at 133.610 kb on + strand at 133.654 kb on + strand at 133.654 kb on + strand at 133.654 kb on + strand at 133.689 kb on + strand at 133.689 kb on + strand at 133.702 kb on + strand at 133.723 kb on - strand at 133.723 kb on - strand at 133.830 kb on - strand, within SM_b20122 at 133.885 kb on + strand, within SM_b20122 at 133.885 kb on + strand, within SM_b20122 at 133.885 kb on + strand, within SM_b20122 at 133.886 kb on - strand, within SM_b20122 at 133.930 kb on - strand, within SM_b20122
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 131,679 - +0.4 131,765 + -0.1 131,766 - -1.2 131,766 - -0.1 131,766 - +0.3 132,010 + -0.5 132,010 + +0.8 132,010 + +0.6 132,011 - -0.1 132,011 - -0.4 132,011 - -1.8 132,011 - -0.4 132,011 - -0.3 132,097 - +0.0 132,131 + +0.4 132,132 - +1.3 132,132 - -0.1 132,132 - -0.4 132,132 - -1.6 132,139 + +0.7 132,139 + +0.1 132,140 - -0.0 132,179 + -0.6 132,180 - -0.7 132,180 - -0.3 132,295 - SM_b20118 0.30 +0.3 132,313 - SM_b20118 0.35 +0.1 132,313 - SM_b20118 0.35 +0.1 132,332 - SM_b20118 0.39 -0.2 132,332 - SM_b20118 0.39 -1.5 132,332 - SM_b20118 0.39 +0.7 132,374 - SM_b20118 0.49 -0.2 132,392 + SM_b20118 0.54 -0.1 132,393 - SM_b20118 0.54 -1.3 132,393 - SM_b20118 0.54 +0.3 132,393 - SM_b20118 0.54 +1.0 132,443 - SM_b20118 0.66 +0.2 132,498 + SM_b20118 0.79 +1.3 132,499 - SM_b20118 0.79 -0.5 132,499 - SM_b20118 0.79 -0.3 132,499 - SM_b20118 0.79 +0.7 132,499 - SM_b20118 0.79 +0.3 132,508 + SM_b20118 0.81 +0.3 132,509 - SM_b20118 0.81 +0.2 132,611 - +0.2 132,848 + SM_b20119 0.67 -0.6 133,022 + SM_b22004 0.19 -0.3 133,025 + SM_b22004 0.20 -0.2 133,166 + SM_b22004 0.56 +0.5 133,167 - SM_b22004 0.56 -0.2 133,188 - SM_b22004 0.62 -0.3 133,368 - SM_b20121 0.31 -0.1 133,476 + SM_b20121 0.70 +0.2 133,609 - +0.5 133,610 + +0.3 133,654 + +0.9 133,654 + -0.5 133,654 + -0.4 133,689 + -0.8 133,689 + +1.4 133,702 + -0.2 133,723 - +0.1 133,723 - -0.7 133,830 - SM_b20122 0.27 -0.7 133,885 + SM_b20122 0.43 +0.4 133,885 + SM_b20122 0.43 +0.2 133,885 + SM_b20122 0.43 -0.1 133,886 - SM_b20122 0.43 +0.2 133,930 - SM_b20122 0.57 -0.2
Or see this region's nucleotide sequence