Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20116 and SM_b20117 are separated by 129 nucleotides SM_b20117 and SM_b20118 are separated by 480 nucleotides SM_b20118 and SM_b20119 are separated by 22 nucleotides
SM_b20116: SM_b20116 - hypothetical protein, at 128,252 to 130,456
_b20116
SM_b20117: SM_b20117 - sugar transferase, at 130,586 to 131,686
_b20117
SM_b20118: SM_b20118 - hypothetical protein, at 132,167 to 132,586
_b20118
SM_b20119: SM_b20119 - hypothetical protein, at 132,609 to 132,965
_b20119
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.591 kb on + strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 129.592 kb on - strand, within SM_b20116 at 130.333 kb on + strand at 130.334 kb on - strand at 130.334 kb on - strand at 130.368 kb on + strand at 130.369 kb on - strand at 130.538 kb on + strand at 130.678 kb on - strand at 130.690 kb on - strand at 130.690 kb on - strand at 130.690 kb on - strand at 131.308 kb on - strand, within SM_b20117 at 131.469 kb on + strand, within SM_b20117 at 131.470 kb on - strand, within SM_b20117 at 131.679 kb on - strand at 131.765 kb on + strand at 131.766 kb on - strand at 131.766 kb on - strand at 131.766 kb on - strand at 132.010 kb on + strand at 132.010 kb on + strand at 132.010 kb on + strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.011 kb on - strand at 132.097 kb on - strand at 132.131 kb on + strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.132 kb on - strand at 132.139 kb on + strand at 132.139 kb on + strand at 132.140 kb on - strand at 132.179 kb on + strand at 132.180 kb on - strand at 132.180 kb on - strand at 132.295 kb on - strand, within SM_b20118 at 132.313 kb on - strand, within SM_b20118 at 132.313 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.332 kb on - strand, within SM_b20118 at 132.374 kb on - strand, within SM_b20118 at 132.392 kb on + strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.393 kb on - strand, within SM_b20118 at 132.443 kb on - strand, within SM_b20118 at 132.498 kb on + strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.499 kb on - strand, within SM_b20118 at 132.508 kb on + strand, within SM_b20118 at 132.509 kb on - strand, within SM_b20118 at 132.611 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 129,591 + SM_b20116 0.61 -0.9 129,591 + SM_b20116 0.61 +0.5 129,591 + SM_b20116 0.61 -0.7 129,591 + SM_b20116 0.61 -0.0 129,592 - SM_b20116 0.61 +1.1 129,592 - SM_b20116 0.61 +1.2 129,592 - SM_b20116 0.61 +0.2 130,333 + +0.2 130,334 - +0.4 130,334 - +0.1 130,368 + +0.2 130,369 - -1.3 130,538 + +2.1 130,678 - -0.4 130,690 - -0.3 130,690 - +1.6 130,690 - -0.3 131,308 - SM_b20117 0.66 +0.5 131,469 + SM_b20117 0.80 +0.4 131,470 - SM_b20117 0.80 +2.0 131,679 - +0.4 131,765 + -0.1 131,766 - -1.2 131,766 - -0.1 131,766 - +0.3 132,010 + -0.5 132,010 + +0.8 132,010 + +0.6 132,011 - -0.1 132,011 - -0.4 132,011 - -1.8 132,011 - -0.4 132,011 - -0.3 132,097 - +0.0 132,131 + +0.4 132,132 - +1.3 132,132 - -0.1 132,132 - -0.4 132,132 - -1.6 132,139 + +0.7 132,139 + +0.1 132,140 - -0.0 132,179 + -0.6 132,180 - -0.7 132,180 - -0.3 132,295 - SM_b20118 0.30 +0.3 132,313 - SM_b20118 0.35 +0.1 132,313 - SM_b20118 0.35 +0.1 132,332 - SM_b20118 0.39 -0.2 132,332 - SM_b20118 0.39 -1.5 132,332 - SM_b20118 0.39 +0.7 132,374 - SM_b20118 0.49 -0.2 132,392 + SM_b20118 0.54 -0.1 132,393 - SM_b20118 0.54 -1.3 132,393 - SM_b20118 0.54 +0.3 132,393 - SM_b20118 0.54 +1.0 132,443 - SM_b20118 0.66 +0.2 132,498 + SM_b20118 0.79 +1.3 132,499 - SM_b20118 0.79 -0.5 132,499 - SM_b20118 0.79 -0.3 132,499 - SM_b20118 0.79 +0.7 132,499 - SM_b20118 0.79 +0.3 132,508 + SM_b20118 0.81 +0.3 132,509 - SM_b20118 0.81 +0.2 132,611 - +0.2
Or see this region's nucleotide sequence