Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20072 and SM_b20073 are separated by 162 nucleotides SM_b20073 and SM_b20074 are separated by 195 nucleotides SM_b20074 and SM_b20075 are separated by 48 nucleotides SM_b20075 and SM_b20076 are separated by 98 nucleotides
SM_b20072: SM_b20072 - rhizopine binding protein, at 81,239 to 82,168
_b20072
SM_b20073: SM_b20073 - oxidoreductase, at 82,331 to 83,188
_b20073
SM_b20074: SM_b20074 - hypothetical protein, at 83,384 to 83,626
_b20074
SM_b20075: SM_b20075 - hypothetical protein, at 83,675 to 83,866
_b20075
SM_b20076: SM_b20076 - short-chain dehydrogenase, at 83,965 to 84,981
_b20076
Position (kb)
82
83
84 Strain fitness (log2 ratio)
-1
0
1 at 81.392 kb on + strand, within SM_b20072 at 81.392 kb on + strand, within SM_b20072 at 81.393 kb on - strand, within SM_b20072 at 81.721 kb on - strand, within SM_b20072 at 81.853 kb on - strand, within SM_b20072 at 81.853 kb on - strand, within SM_b20072 at 82.157 kb on + strand at 82.157 kb on + strand at 82.158 kb on - strand at 82.158 kb on - strand at 82.172 kb on + strand at 82.278 kb on + strand at 82.279 kb on - strand at 82.279 kb on - strand at 82.281 kb on - strand at 82.380 kb on + strand at 82.381 kb on - strand at 82.381 kb on - strand at 82.381 kb on - strand at 82.450 kb on + strand, within SM_b20073 at 82.450 kb on + strand, within SM_b20073 at 82.451 kb on - strand, within SM_b20073 at 82.547 kb on + strand, within SM_b20073 at 82.548 kb on - strand, within SM_b20073 at 82.617 kb on + strand, within SM_b20073 at 82.618 kb on - strand, within SM_b20073 at 82.716 kb on + strand, within SM_b20073 at 82.716 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.971 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 82.978 kb on + strand, within SM_b20073 at 83.268 kb on - strand at 83.380 kb on + strand at 83.380 kb on + strand at 83.381 kb on - strand at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.555 kb on + strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.556 kb on - strand, within SM_b20074 at 83.759 kb on + strand, within SM_b20075 at 83.760 kb on - strand, within SM_b20075 at 83.927 kb on + strand at 83.927 kb on + strand at 83.928 kb on - strand at 83.928 kb on - strand at 83.964 kb on + strand at 83.965 kb on - strand at 83.965 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 81,392 + SM_b20072 0.16 +0.1 81,392 + SM_b20072 0.16 -0.5 81,393 - SM_b20072 0.17 -0.2 81,721 - SM_b20072 0.52 +0.4 81,853 - SM_b20072 0.66 -0.9 81,853 - SM_b20072 0.66 -0.3 82,157 + -0.6 82,157 + -0.4 82,158 - +1.0 82,158 - -0.1 82,172 + +0.7 82,278 + +0.1 82,279 - +0.0 82,279 - -0.7 82,281 - +1.2 82,380 + -0.3 82,381 - -0.1 82,381 - -1.5 82,381 - +1.1 82,450 + SM_b20073 0.14 -1.2 82,450 + SM_b20073 0.14 +0.1 82,451 - SM_b20073 0.14 -0.8 82,547 + SM_b20073 0.25 +0.1 82,548 - SM_b20073 0.25 -0.8 82,617 + SM_b20073 0.33 +0.2 82,618 - SM_b20073 0.33 -0.7 82,716 + SM_b20073 0.45 -0.4 82,716 + SM_b20073 0.45 -0.3 82,971 + SM_b20073 0.75 -0.0 82,971 + SM_b20073 0.75 -1.5 82,978 + SM_b20073 0.75 -0.3 82,978 + SM_b20073 0.75 -0.1 83,268 - +0.2 83,380 + -1.2 83,380 + -0.3 83,381 - -0.7 83,555 + SM_b20074 0.70 +0.4 83,555 + SM_b20074 0.70 -1.0 83,555 + SM_b20074 0.70 -0.8 83,555 + SM_b20074 0.70 +0.1 83,556 - SM_b20074 0.71 +0.1 83,556 - SM_b20074 0.71 -0.7 83,556 - SM_b20074 0.71 -0.2 83,759 + SM_b20075 0.44 -0.2 83,760 - SM_b20075 0.44 +0.1 83,927 + -1.5 83,927 + +0.7 83,928 - +0.6 83,928 - -1.4 83,964 + +1.7 83,965 - -0.1 83,965 - -0.1
Or see this region's nucleotide sequence