Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20057

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20056 and SM_b20057 overlap by 4 nucleotidesSM_b20057 and SM_b20058 overlap by 4 nucleotidesSM_b20058 and SM_b20059 are separated by 3 nucleotides SM_b20056: SM_b20056 - ABC transporter substrate-binding protein, at 66,644 to 67,711 _b20056 SM_b20057: SM_b20057 - ABC transporter permease, at 67,708 to 68,751 _b20057 SM_b20058: SM_b20058 - ABC transporter ATP-binding protein, at 68,748 to 69,548 _b20058 SM_b20059: SM_b20059 - SAM-dependent methyltransferase, at 69,552 to 70,331 _b20059 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1at 68.723 kb on + strandat 69.594 kb on + strandat 69.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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68,723 + +0.1
69,594 + +0.5
69,595 - +0.0

Or see this region's nucleotide sequence