Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20040

Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20039 and SM_b20040 are separated by 81 nucleotidesSM_b20040 and SM_b20041 are separated by 190 nucleotidesSM_b20041 and SM_b20042 are separated by 22 nucleotides SM_b20039: SM_b20039 - transcriptional regulator, at 49,146 to 50,570 _b20039 SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512 _b20040 SM_b20041: SM_b20041 - hypothetical protein, at 51,703 to 52,233 _b20041 SM_b20042: SM_b20042 - hypothetical protein, at 52,256 to 53,413 _b20042 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.800 kb on - strand, within SM_b20039at 49.804 kb on + strand, within SM_b20039at 49.804 kb on + strand, within SM_b20039at 49.805 kb on - strand, within SM_b20039at 49.805 kb on - strand, within SM_b20039at 49.805 kb on - strand, within SM_b20039at 49.868 kb on + strand, within SM_b20039at 49.868 kb on + strand, within SM_b20039at 49.870 kb on + strand, within SM_b20039at 49.870 kb on + strand, within SM_b20039at 49.871 kb on - strand, within SM_b20039at 49.871 kb on - strand, within SM_b20039at 49.927 kb on + strand, within SM_b20039at 49.927 kb on + strand, within SM_b20039at 49.928 kb on - strand, within SM_b20039at 50.020 kb on - strand, within SM_b20039at 50.020 kb on - strand, within SM_b20039at 50.108 kb on - strand, within SM_b20039at 50.388 kb on + strand, within SM_b20039at 50.651 kb on + strandat 50.753 kb on + strand, within SM_b20040at 50.754 kb on - strand, within SM_b20040at 50.898 kb on - strand, within SM_b20040at 51.136 kb on + strand, within SM_b20040at 51.696 kb on + strandat 51.696 kb on + strandat 51.696 kb on + strandat 51.697 kb on - strandat 51.720 kb on - strandat 51.770 kb on + strand, within SM_b20041at 51.925 kb on - strand, within SM_b20041at 52.002 kb on + strand, within SM_b20041at 52.012 kb on + strand, within SM_b20041at 52.012 kb on + strand, within SM_b20041at 52.012 kb on + strand, within SM_b20041at 52.013 kb on - strand, within SM_b20041at 52.165 kb on - strand, within SM_b20041at 52.165 kb on - strand, within SM_b20041

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
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49,800 - SM_b20039 0.46 -0.2
49,804 + SM_b20039 0.46 -0.7
49,804 + SM_b20039 0.46 -0.3
49,805 - SM_b20039 0.46 +0.7
49,805 - SM_b20039 0.46 -0.3
49,805 - SM_b20039 0.46 +0.1
49,868 + SM_b20039 0.51 -0.6
49,868 + SM_b20039 0.51 -0.8
49,870 + SM_b20039 0.51 +0.6
49,870 + SM_b20039 0.51 -0.9
49,871 - SM_b20039 0.51 +0.7
49,871 - SM_b20039 0.51 -0.6
49,927 + SM_b20039 0.55 +0.2
49,927 + SM_b20039 0.55 +0.9
49,928 - SM_b20039 0.55 +0.5
50,020 - SM_b20039 0.61 -0.7
50,020 - SM_b20039 0.61 +0.1
50,108 - SM_b20039 0.68 -1.2
50,388 + SM_b20039 0.87 +0.2
50,651 + -0.6
50,753 + SM_b20040 0.12 +0.2
50,754 - SM_b20040 0.12 -0.2
50,898 - SM_b20040 0.29 +0.0
51,136 + SM_b20040 0.56 +0.2
51,696 + -0.2
51,696 + -1.7
51,696 + +0.7
51,697 - -0.2
51,720 - +0.3
51,770 + SM_b20041 0.13 +0.2
51,925 - SM_b20041 0.42 +0.0
52,002 + SM_b20041 0.56 +0.3
52,012 + SM_b20041 0.58 +2.3
52,012 + SM_b20041 0.58 +0.1
52,012 + SM_b20041 0.58 +0.3
52,013 - SM_b20041 0.58 -1.9
52,165 - SM_b20041 0.87 -2.2
52,165 - SM_b20041 0.87 -0.0

Or see this region's nucleotide sequence