Experiment: Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20028 and SM_b20029 are separated by 439 nucleotides SM_b20029 and SM_b20030 overlap by 1 nucleotides SM_b20030 and SM_b20031 are separated by 25 nucleotides SM_b20031 and SM_b20032 are separated by 96 nucleotides
SM_b20028: SM_b20028 - hypothetical protein, at 39,374 to 40,510
_b20028
SM_b20029: SM_b20029 - hypothetical protein, at 40,950 to 41,423
_b20029
SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280
_b20030
SM_b20031: SM_b20031 - hypothetical protein, at 42,306 to 42,554
_b20031
SM_b20032: SM_b20032 - hypothetical protein, at 42,651 to 43,385
_b20032
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.514 kb on + strand at 40.515 kb on - strand at 40.515 kb on - strand at 40.528 kb on + strand at 40.547 kb on + strand at 40.547 kb on + strand at 40.548 kb on - strand at 40.548 kb on - strand at 40.565 kb on + strand at 40.565 kb on + strand at 40.566 kb on - strand at 40.597 kb on + strand at 40.598 kb on - strand at 40.598 kb on - strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 41.048 kb on + strand, within SM_b20029 at 41.154 kb on + strand, within SM_b20029 at 41.154 kb on + strand, within SM_b20029 at 41.155 kb on - strand, within SM_b20029 at 41.155 kb on - strand, within SM_b20029 at 41.188 kb on - strand, within SM_b20029 at 41.268 kb on + strand, within SM_b20029 at 41.330 kb on + strand, within SM_b20029 at 41.531 kb on - strand, within SM_b20030 at 41.614 kb on - strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.667 kb on - strand, within SM_b20030 at 41.667 kb on - strand, within SM_b20030 at 42.239 kb on + strand at 42.239 kb on + strand at 42.307 kb on + strand at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.500 kb on - strand, within SM_b20031 at 42.500 kb on - strand, within SM_b20031 at 42.583 kb on + strand at 42.583 kb on + strand at 42.584 kb on - strand at 42.776 kb on - strand, within SM_b20032 at 42.825 kb on + strand, within SM_b20032 at 42.825 kb on + strand, within SM_b20032 at 42.826 kb on - strand, within SM_b20032 at 43.053 kb on - strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Agrobacterium rhizogenes K599 grown in Agro_defined_trehalose (5 mM 3-keto-trehalose) (C) remove 40,510 + +2.0 40,510 + +0.4 40,510 + -0.6 40,510 + -0.9 40,511 - +0.4 40,511 - -1.1 40,511 - -0.6 40,511 - -1.0 40,511 - +1.7 40,512 + -0.6 40,512 + -0.0 40,512 + -0.3 40,512 + -0.2 40,512 + -0.7 40,512 + -0.9 40,512 + -0.0 40,513 - +0.2 40,513 - -0.2 40,513 - -0.5 40,513 - +0.2 40,513 - -0.4 40,513 - +0.2 40,514 + -0.3 40,515 - -0.2 40,515 - +0.3 40,528 + +0.4 40,547 + -1.0 40,547 + +0.2 40,548 - +0.7 40,548 - -0.3 40,565 + +0.0 40,565 + +0.2 40,566 - -1.9 40,597 + +1.9 40,598 - -0.3 40,598 - +0.1 40,801 + -0.2 40,801 + -0.1 40,801 + +0.4 40,801 + +0.6 40,801 + -0.5 40,802 - +0.1 40,802 - -1.2 40,802 - +1.7 40,802 - -0.2 40,802 - +0.1 41,048 + SM_b20029 0.21 -0.0 41,154 + SM_b20029 0.43 +0.4 41,154 + SM_b20029 0.43 +0.4 41,155 - SM_b20029 0.43 -0.2 41,155 - SM_b20029 0.43 +2.0 41,188 - SM_b20029 0.50 +0.9 41,268 + SM_b20029 0.67 +0.3 41,330 + SM_b20029 0.80 +1.7 41,531 - SM_b20030 0.13 +0.4 41,614 - SM_b20030 0.22 -0.8 41,666 + SM_b20030 0.28 +0.7 41,666 + SM_b20030 0.28 +0.3 41,666 + SM_b20030 0.28 +0.1 41,666 + SM_b20030 0.28 -0.9 41,667 - SM_b20030 0.28 -1.2 41,667 - SM_b20030 0.28 -0.9 42,239 + +0.2 42,239 + +0.3 42,307 + -0.0 42,372 - SM_b20031 0.27 -0.2 42,372 - SM_b20031 0.27 -1.5 42,372 - SM_b20031 0.27 +1.1 42,372 - SM_b20031 0.27 -0.5 42,500 - SM_b20031 0.78 -0.9 42,500 - SM_b20031 0.78 -1.9 42,583 + +0.3 42,583 + -2.3 42,584 - -0.3 42,776 - SM_b20032 0.17 +0.2 42,825 + SM_b20032 0.24 +0.1 42,825 + SM_b20032 0.24 +0.4 42,826 - SM_b20032 0.24 -1.2 43,053 - SM_b20032 0.55 -0.3 43,275 + SM_b20032 0.85 +0.1 43,275 + SM_b20032 0.85 +0.0 43,275 + SM_b20032 0.85 +0.3 43,276 - SM_b20032 0.85 +0.2 43,276 - SM_b20032 0.85 -0.9 43,276 - SM_b20032 0.85 -0.8
Or see this region's nucleotide sequence