Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0198 and Psest_0199 are separated by 598 nucleotides Psest_0199 and Psest_0200 are separated by 281 nucleotides Psest_0200 and Psest_0201 are separated by 120 nucleotides
Psest_0198: Psest_0198 - TRAP transporter solute receptor, TAXI family, at 195,463 to 196,428
_0198
Psest_0199: Psest_0199 - PAS domain S-box, at 197,027 to 198,613
_0199
Psest_0200: Psest_0200 - hypothetical protein, at 198,895 to 199,059
_0200
Psest_0201: Psest_0201 - PAS domain S-box, at 199,180 to 200,760
_0201
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 196.061 kb on - strand, within Psest_0198 at 196.155 kb on - strand, within Psest_0198 at 196.155 kb on - strand, within Psest_0198 at 196.155 kb on - strand, within Psest_0198 at 196.304 kb on + strand, within Psest_0198 at 196.305 kb on - strand, within Psest_0198 at 196.305 kb on - strand, within Psest_0198 at 196.307 kb on + strand, within Psest_0198 at 196.308 kb on - strand, within Psest_0198 at 196.308 kb on - strand, within Psest_0198 at 196.361 kb on - strand at 196.499 kb on - strand at 196.499 kb on - strand at 196.556 kb on + strand at 196.574 kb on + strand at 196.575 kb on - strand at 196.575 kb on - strand at 196.621 kb on + strand at 196.622 kb on - strand at 196.622 kb on - strand at 196.622 kb on - strand at 196.702 kb on - strand at 196.907 kb on + strand at 197.120 kb on + strand at 197.120 kb on + strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.414 kb on + strand, within Psest_0199 at 197.414 kb on + strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.687 kb on + strand, within Psest_0199 at 197.687 kb on + strand, within Psest_0199 at 197.688 kb on - strand, within Psest_0199 at 197.708 kb on + strand, within Psest_0199 at 198.001 kb on + strand, within Psest_0199 at 198.213 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.331 kb on + strand, within Psest_0199 at 198.332 kb on - strand, within Psest_0199 at 198.576 kb on + strand at 198.653 kb on + strand at 198.660 kb on + strand at 198.699 kb on - strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 199.083 kb on + strand at 199.122 kb on - strand at 199.179 kb on + strand at 199.179 kb on + strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.236 kb on + strand at 199.274 kb on - strand at 199.274 kb on - strand at 199.274 kb on - strand at 199.510 kb on + strand, within Psest_0201 at 199.511 kb on - strand, within Psest_0201 at 199.511 kb on - strand, within Psest_0201 at 199.568 kb on - strand, within Psest_0201
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 196,061 - Psest_0198 0.62 -2.3 196,155 - Psest_0198 0.72 +2.2 196,155 - Psest_0198 0.72 +0.8 196,155 - Psest_0198 0.72 +2.0 196,304 + Psest_0198 0.87 -0.9 196,305 - Psest_0198 0.87 -0.4 196,305 - Psest_0198 0.87 -1.0 196,307 + Psest_0198 0.87 -0.7 196,308 - Psest_0198 0.87 +1.7 196,308 - Psest_0198 0.87 -0.6 196,361 - +5.1 196,499 - +0.5 196,499 - +0.7 196,556 + +1.1 196,574 + -2.1 196,575 - -0.1 196,575 - -0.3 196,621 + -1.6 196,622 - -0.5 196,622 - -0.1 196,622 - +0.3 196,702 - -0.7 196,907 + -0.1 197,120 + +0.3 197,120 + -2.0 197,121 - +0.0 197,121 - -0.3 197,121 - -1.6 197,121 - +1.7 197,121 - -0.0 197,121 - +1.1 197,121 - -0.9 197,414 + Psest_0199 0.24 -0.3 197,414 + Psest_0199 0.24 +0.8 197,415 - Psest_0199 0.24 -2.7 197,415 - Psest_0199 0.24 -0.9 197,415 - Psest_0199 0.24 +0.8 197,415 - Psest_0199 0.24 -0.6 197,415 - Psest_0199 0.24 -0.8 197,415 - Psest_0199 0.24 -1.6 197,687 + Psest_0199 0.42 +1.6 197,687 + Psest_0199 0.42 -0.5 197,688 - Psest_0199 0.42 -2.2 197,708 + Psest_0199 0.43 -0.5 198,001 + Psest_0199 0.61 +1.2 198,213 + Psest_0199 0.75 +0.7 198,300 + Psest_0199 0.80 -0.8 198,300 + Psest_0199 0.80 -3.0 198,300 + Psest_0199 0.80 -0.4 198,300 + Psest_0199 0.80 -0.1 198,301 - Psest_0199 0.80 -0.7 198,301 - Psest_0199 0.80 +0.1 198,301 - Psest_0199 0.80 -0.7 198,301 - Psest_0199 0.80 -1.3 198,331 + Psest_0199 0.82 -0.5 198,332 - Psest_0199 0.82 -0.9 198,576 + -1.9 198,653 + +0.2 198,660 + +0.4 198,699 - +0.1 198,765 + +0.3 198,765 + +0.8 198,765 + -1.0 198,765 + -0.1 198,769 + -1.0 198,769 + -0.5 198,769 + +0.6 198,769 + -0.9 198,769 + -0.3 198,769 + -0.1 198,770 - -0.3 198,770 - +0.4 198,770 - -0.1 198,770 - -0.9 198,770 - -1.6 198,801 + -0.9 198,801 + -0.4 198,801 + +0.3 198,801 + -0.1 198,801 + +1.2 198,801 + +1.0 198,801 + -0.9 198,801 + -1.3 198,801 + +0.0 198,801 + -0.8 198,875 + -0.6 198,875 + -0.6 198,875 + -0.8 198,875 + -0.9 198,875 + +3.7 198,875 + +0.2 198,875 + +2.2 198,876 - +0.5 198,876 - +0.7 198,876 - +1.0 198,876 - -1.4 198,876 - -1.8 199,083 + -0.1 199,122 - +0.9 199,179 + +0.3 199,179 + +1.1 199,180 - -0.9 199,180 - -1.6 199,180 - -2.1 199,180 - -0.9 199,236 + +0.3 199,274 - -2.6 199,274 - +1.2 199,274 - -1.9 199,510 + Psest_0201 0.21 +1.8 199,511 - Psest_0201 0.21 +3.0 199,511 - Psest_0201 0.21 -0.6 199,568 - Psest_0201 0.25 -0.2
Or see this region's nucleotide sequence