Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1526

Experiment: L-Lysine 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1525 and Psest_1526 are separated by 9 nucleotidesPsest_1526 and Psest_1527 are separated by 106 nucleotides Psest_1525: Psest_1525 - Uncharacterized protein conserved in bacteria, at 1,624,302 to 1,625,774 _1525 Psest_1526: Psest_1526 - Predicted membrane protein, at 1,625,784 to 1,627,031 _1526 Psest_1527: Psest_1527 - Na+/proline symporter, at 1,627,138 to 1,630,605 _1527 Position (kb) 1625 1626 1627 1628Strain fitness (log2 ratio) -1 0 1 2 3at 1624.859 kb on + strand, within Psest_1525at 1625.152 kb on + strand, within Psest_1525at 1625.153 kb on - strand, within Psest_1525at 1625.231 kb on + strand, within Psest_1525at 1625.307 kb on + strand, within Psest_1525at 1625.308 kb on - strand, within Psest_1525at 1625.308 kb on - strand, within Psest_1525at 1625.419 kb on - strand, within Psest_1525at 1625.419 kb on - strand, within Psest_1525at 1625.419 kb on - strand, within Psest_1525at 1625.772 kb on + strandat 1626.028 kb on + strand, within Psest_1526at 1626.028 kb on + strand, within Psest_1526at 1626.028 kb on + strand, within Psest_1526at 1626.028 kb on + strand, within Psest_1526at 1626.029 kb on - strand, within Psest_1526at 1626.181 kb on + strand, within Psest_1526at 1626.181 kb on + strand, within Psest_1526at 1626.181 kb on + strand, within Psest_1526at 1626.181 kb on + strand, within Psest_1526at 1626.182 kb on - strand, within Psest_1526at 1626.184 kb on + strand, within Psest_1526at 1626.184 kb on + strand, within Psest_1526at 1626.184 kb on + strand, within Psest_1526at 1626.185 kb on - strand, within Psest_1526at 1626.185 kb on - strand, within Psest_1526at 1626.205 kb on + strand, within Psest_1526at 1626.405 kb on + strand, within Psest_1526at 1626.453 kb on + strand, within Psest_1526at 1626.454 kb on - strand, within Psest_1526at 1626.454 kb on - strand, within Psest_1526at 1626.458 kb on - strand, within Psest_1526at 1626.508 kb on + strand, within Psest_1526at 1626.807 kb on + strand, within Psest_1526at 1626.808 kb on - strand, within Psest_1526at 1626.808 kb on - strand, within Psest_1526at 1626.808 kb on - strand, within Psest_1526at 1626.808 kb on - strand, within Psest_1526at 1627.072 kb on - strandat 1627.139 kb on + strandat 1627.346 kb on + strandat 1627.375 kb on - strandat 1627.540 kb on + strand, within Psest_1527at 1627.642 kb on + strand, within Psest_1527at 1627.642 kb on + strand, within Psest_1527at 1627.643 kb on - strand, within Psest_1527at 1627.643 kb on - strand, within Psest_1527at 1627.643 kb on - strand, within Psest_1527at 1627.643 kb on - strand, within Psest_1527at 1627.643 kb on - strand, within Psest_1527at 1627.643 kb on - strand, within Psest_1527at 1627.643 kb on - strand, within Psest_1527at 1627.643 kb on - strand, within Psest_1527at 1627.924 kb on + strand, within Psest_1527at 1627.957 kb on + strand, within Psest_1527

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 200 mM
remove
1,624,859 + Psest_1525 0.38 -0.3
1,625,152 + Psest_1525 0.58 -1.1
1,625,153 - Psest_1525 0.58 -0.1
1,625,231 + Psest_1525 0.63 -1.1
1,625,307 + Psest_1525 0.68 -1.0
1,625,308 - Psest_1525 0.68 +1.2
1,625,308 - Psest_1525 0.68 +0.1
1,625,419 - Psest_1525 0.76 +0.5
1,625,419 - Psest_1525 0.76 -1.2
1,625,419 - Psest_1525 0.76 +0.2
1,625,772 + +0.7
1,626,028 + Psest_1526 0.20 +1.3
1,626,028 + Psest_1526 0.20 +1.3
1,626,028 + Psest_1526 0.20 +0.4
1,626,028 + Psest_1526 0.20 +0.1
1,626,029 - Psest_1526 0.20 +0.2
1,626,181 + Psest_1526 0.32 +1.1
1,626,181 + Psest_1526 0.32 +1.1
1,626,181 + Psest_1526 0.32 -0.8
1,626,181 + Psest_1526 0.32 +1.2
1,626,182 - Psest_1526 0.32 +3.7
1,626,184 + Psest_1526 0.32 -0.0
1,626,184 + Psest_1526 0.32 -0.3
1,626,184 + Psest_1526 0.32 +1.2
1,626,185 - Psest_1526 0.32 +1.7
1,626,185 - Psest_1526 0.32 -1.1
1,626,205 + Psest_1526 0.34 -1.0
1,626,405 + Psest_1526 0.50 +0.8
1,626,453 + Psest_1526 0.54 +0.8
1,626,454 - Psest_1526 0.54 +0.5
1,626,454 - Psest_1526 0.54 +1.2
1,626,458 - Psest_1526 0.54 +1.1
1,626,508 + Psest_1526 0.58 +0.2
1,626,807 + Psest_1526 0.82 -0.0
1,626,808 - Psest_1526 0.82 +1.0
1,626,808 - Psest_1526 0.82 +0.7
1,626,808 - Psest_1526 0.82 -0.2
1,626,808 - Psest_1526 0.82 -0.1
1,627,072 - -0.6
1,627,139 + +0.0
1,627,346 + -0.8
1,627,375 - -0.9
1,627,540 + Psest_1527 0.12 +0.5
1,627,642 + Psest_1527 0.15 +0.5
1,627,642 + Psest_1527 0.15 +0.2
1,627,643 - Psest_1527 0.15 +0.4
1,627,643 - Psest_1527 0.15 -0.2
1,627,643 - Psest_1527 0.15 +0.4
1,627,643 - Psest_1527 0.15 +0.3
1,627,643 - Psest_1527 0.15 +0.9
1,627,643 - Psest_1527 0.15 +0.4
1,627,643 - Psest_1527 0.15 +1.3
1,627,643 - Psest_1527 0.15 +0.7
1,627,924 + Psest_1527 0.23 +2.0
1,627,957 + Psest_1527 0.24 +0.1

Or see this region's nucleotide sequence