Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1137

Experiment: L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1135 and Psest_1136 overlap by 14 nucleotidesPsest_1136 and Psest_1137 are separated by 30 nucleotidesPsest_1137 and Psest_1138 overlap by 8 nucleotidesPsest_1138 and Psest_1139 are separated by 19 nucleotides Psest_1135: Psest_1135 - Protein of unknown function (DUF3182)., at 1,232,451 to 1,233,596 _1135 Psest_1136: Psest_1136 - Prolyl oligopeptidase family., at 1,233,583 to 1,234,374 _1136 Psest_1137: Psest_1137 - hypothetical protein, at 1,234,405 to 1,235,433 _1137 Psest_1138: Psest_1138 - ATP:cob(I)alamin adenosyltransferase, at 1,235,426 to 1,236,016 _1138 Psest_1139: Psest_1139 - PAS domain S-box, at 1,236,036 to 1,238,051 _1139 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1233.520 kb on + strandat 1233.583 kb on - strandat 1233.630 kb on + strandat 1233.847 kb on + strand, within Psest_1136at 1233.848 kb on - strand, within Psest_1136at 1233.848 kb on - strand, within Psest_1136at 1233.848 kb on - strand, within Psest_1136at 1233.911 kb on - strand, within Psest_1136at 1233.911 kb on - strand, within Psest_1136at 1233.986 kb on - strand, within Psest_1136at 1233.986 kb on - strand, within Psest_1136at 1234.116 kb on - strand, within Psest_1136at 1234.116 kb on - strand, within Psest_1136at 1234.192 kb on - strand, within Psest_1136at 1234.265 kb on - strand, within Psest_1136at 1234.376 kb on + strandat 1234.376 kb on + strandat 1234.377 kb on - strandat 1234.377 kb on - strandat 1234.754 kb on + strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.755 kb on - strand, within Psest_1137at 1234.822 kb on - strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.964 kb on + strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.965 kb on - strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.967 kb on + strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.968 kb on - strand, within Psest_1137at 1234.988 kb on + strand, within Psest_1137at 1235.074 kb on + strand, within Psest_1137at 1235.108 kb on + strand, within Psest_1137at 1235.108 kb on + strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.109 kb on - strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.129 kb on + strand, within Psest_1137at 1235.130 kb on - strand, within Psest_1137at 1235.130 kb on - strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.132 kb on + strand, within Psest_1137at 1235.222 kb on + strand, within Psest_1137at 1235.222 kb on + strand, within Psest_1137at 1235.223 kb on - strand, within Psest_1137at 1235.292 kb on + strand, within Psest_1137at 1235.292 kb on + strand, within Psest_1137at 1235.314 kb on + strand, within Psest_1137at 1235.314 kb on + strand, within Psest_1137at 1235.315 kb on - strand, within Psest_1137at 1235.315 kb on - strand, within Psest_1137at 1235.870 kb on + strand, within Psest_1138at 1236.022 kb on - strandat 1236.022 kb on - strandat 1236.025 kb on - strandat 1236.154 kb on + strandat 1236.154 kb on + strandat 1236.154 kb on + strandat 1236.155 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 200 mM
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1,233,520 + +0.9
1,233,583 - -0.8
1,233,630 + +1.1
1,233,847 + Psest_1136 0.33 +0.6
1,233,848 - Psest_1136 0.33 +0.4
1,233,848 - Psest_1136 0.33 +0.3
1,233,848 - Psest_1136 0.33 +0.1
1,233,911 - Psest_1136 0.41 +0.2
1,233,911 - Psest_1136 0.41 +1.4
1,233,986 - Psest_1136 0.51 +0.1
1,233,986 - Psest_1136 0.51 -0.7
1,234,116 - Psest_1136 0.67 +1.9
1,234,116 - Psest_1136 0.67 -0.2
1,234,192 - Psest_1136 0.77 -1.1
1,234,265 - Psest_1136 0.86 +1.0
1,234,376 + +1.5
1,234,376 + +0.4
1,234,377 - -0.9
1,234,377 - +3.1
1,234,754 + Psest_1137 0.34 +0.1
1,234,755 - Psest_1137 0.34 -0.0
1,234,755 - Psest_1137 0.34 +1.0
1,234,755 - Psest_1137 0.34 -2.0
1,234,755 - Psest_1137 0.34 +1.1
1,234,755 - Psest_1137 0.34 +2.7
1,234,822 - Psest_1137 0.41 -1.8
1,234,964 + Psest_1137 0.54 -0.1
1,234,964 + Psest_1137 0.54 +0.1
1,234,964 + Psest_1137 0.54 +0.1
1,234,964 + Psest_1137 0.54 -2.2
1,234,964 + Psest_1137 0.54 +0.1
1,234,964 + Psest_1137 0.54 -0.5
1,234,964 + Psest_1137 0.54 -0.4
1,234,964 + Psest_1137 0.54 -0.4
1,234,964 + Psest_1137 0.54 +1.2
1,234,964 + Psest_1137 0.54 -0.3
1,234,964 + Psest_1137 0.54 -1.6
1,234,964 + Psest_1137 0.54 +0.2
1,234,964 + Psest_1137 0.54 +0.0
1,234,964 + Psest_1137 0.54 -0.8
1,234,964 + Psest_1137 0.54 -1.4
1,234,964 + Psest_1137 0.54 +0.1
1,234,964 + Psest_1137 0.54 +0.6
1,234,965 - Psest_1137 0.54 +0.6
1,234,965 - Psest_1137 0.54 +0.2
1,234,965 - Psest_1137 0.54 -1.0
1,234,965 - Psest_1137 0.54 -1.4
1,234,965 - Psest_1137 0.54 +0.4
1,234,965 - Psest_1137 0.54 -0.3
1,234,965 - Psest_1137 0.54 -0.3
1,234,965 - Psest_1137 0.54 +0.3
1,234,965 - Psest_1137 0.54 +2.0
1,234,965 - Psest_1137 0.54 -1.8
1,234,965 - Psest_1137 0.54 -0.0
1,234,965 - Psest_1137 0.54 +0.6
1,234,965 - Psest_1137 0.54 -0.6
1,234,965 - Psest_1137 0.54 +0.0
1,234,965 - Psest_1137 0.54 -1.0
1,234,965 - Psest_1137 0.54 -1.5
1,234,965 - Psest_1137 0.54 -0.1
1,234,965 - Psest_1137 0.54 -0.7
1,234,965 - Psest_1137 0.54 +0.4
1,234,965 - Psest_1137 0.54 +0.8
1,234,965 - Psest_1137 0.54 +0.4
1,234,965 - Psest_1137 0.54 +0.3
1,234,965 - Psest_1137 0.54 +0.3
1,234,965 - Psest_1137 0.54 +0.4
1,234,965 - Psest_1137 0.54 -1.0
1,234,967 + Psest_1137 0.55 +1.4
1,234,967 + Psest_1137 0.55 +0.1
1,234,967 + Psest_1137 0.55 +0.3
1,234,967 + Psest_1137 0.55 -0.5
1,234,967 + Psest_1137 0.55 +0.7
1,234,967 + Psest_1137 0.55 -1.8
1,234,967 + Psest_1137 0.55 +0.3
1,234,967 + Psest_1137 0.55 +0.1
1,234,967 + Psest_1137 0.55 -0.3
1,234,968 - Psest_1137 0.55 -0.1
1,234,968 - Psest_1137 0.55 -0.6
1,234,968 - Psest_1137 0.55 +0.3
1,234,968 - Psest_1137 0.55 -0.2
1,234,968 - Psest_1137 0.55 +0.5
1,234,988 + Psest_1137 0.57 -1.6
1,235,074 + Psest_1137 0.65 -1.5
1,235,108 + Psest_1137 0.68 -1.3
1,235,108 + Psest_1137 0.68 -0.4
1,235,109 - Psest_1137 0.68 -0.4
1,235,109 - Psest_1137 0.68 -0.4
1,235,109 - Psest_1137 0.68 +2.6
1,235,129 + Psest_1137 0.70 +0.8
1,235,129 + Psest_1137 0.70 -1.7
1,235,129 + Psest_1137 0.70 -0.6
1,235,129 + Psest_1137 0.70 -1.1
1,235,129 + Psest_1137 0.70 -1.4
1,235,129 + Psest_1137 0.70 -0.2
1,235,129 + Psest_1137 0.70 +0.5
1,235,129 + Psest_1137 0.70 -2.0
1,235,129 + Psest_1137 0.70 -0.7
1,235,129 + Psest_1137 0.70 +0.0
1,235,129 + Psest_1137 0.70 +0.7
1,235,129 + Psest_1137 0.70 -0.6
1,235,129 + Psest_1137 0.70 -2.2
1,235,129 + Psest_1137 0.70 +0.3
1,235,130 - Psest_1137 0.70 -0.4
1,235,130 - Psest_1137 0.70 -1.0
1,235,132 + Psest_1137 0.71 -1.3
1,235,132 + Psest_1137 0.71 +1.1
1,235,132 + Psest_1137 0.71 -0.5
1,235,132 + Psest_1137 0.71 -0.6
1,235,222 + Psest_1137 0.79 -1.0
1,235,222 + Psest_1137 0.79 -1.5
1,235,223 - Psest_1137 0.79 -1.5
1,235,292 + Psest_1137 0.86 -2.2
1,235,292 + Psest_1137 0.86 -1.6
1,235,314 + Psest_1137 0.88 -0.0
1,235,314 + Psest_1137 0.88 -0.6
1,235,315 - Psest_1137 0.88 +0.9
1,235,315 - Psest_1137 0.88 -0.7
1,235,870 + Psest_1138 0.75 -0.8
1,236,022 - +1.6
1,236,022 - +1.0
1,236,025 - +1.0
1,236,154 + +0.7
1,236,154 + +2.7
1,236,154 + +0.9
1,236,155 - -1.6

Or see this region's nucleotide sequence