Experiment: Post-colonization (Day 12) - Cage2;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4235 and BT4236 are separated by 304 nucleotides BT4236 and BT4237 are separated by 47 nucleotides BT4237 and BT4238 are separated by 64 nucleotides
BT4235: BT4235 - hypothetical protein (NCBI ptt file), at 5,575,327 to 5,575,962
BT4235
BT4236: BT4236 - two-component system sensor histidine kinase/response regulator, hybrid ('one-component system') (NCBI ptt file), at 5,576,267 to 5,580,424
BT4236
BT4237: BT4237 - tRNA pseudouridine synthase A (NCBI ptt file), at 5,580,472 to 5,581,281
BT4237
BT4238: BT4238 - putative permease (NCBI ptt file), at 5,581,346 to 5,582,245
BT4238
Position (kb) 5576
5577
5578
5579
5580
5581 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 5575.320 kb on + strand at 5575.321 kb on - strand at 5575.323 kb on + strand at 5575.323 kb on + strand at 5575.338 kb on + strand at 5575.386 kb on + strand at 5575.445 kb on + strand, within BT4235 at 5575.445 kb on + strand, within BT4235 at 5575.446 kb on - strand, within BT4235 at 5575.447 kb on + strand, within BT4235 at 5575.448 kb on - strand, within BT4235 at 5575.452 kb on + strand, within BT4235 at 5575.452 kb on + strand, within BT4235 at 5575.454 kb on + strand, within BT4235 at 5575.477 kb on - strand, within BT4235 at 5575.551 kb on + strand, within BT4235 at 5575.551 kb on + strand, within BT4235 at 5575.555 kb on - strand, within BT4235 at 5575.591 kb on + strand, within BT4235 at 5575.664 kb on + strand, within BT4235 at 5575.664 kb on + strand, within BT4235 at 5575.698 kb on + strand, within BT4235 at 5575.702 kb on - strand, within BT4235 at 5575.722 kb on - strand, within BT4235 at 5575.726 kb on + strand, within BT4235 at 5575.726 kb on + strand, within BT4235 at 5575.727 kb on - strand, within BT4235 at 5575.730 kb on + strand, within BT4235 at 5575.730 kb on + strand, within BT4235 at 5575.731 kb on - strand, within BT4235 at 5575.731 kb on - strand, within BT4235 at 5575.734 kb on + strand, within BT4235 at 5575.735 kb on - strand, within BT4235 at 5575.737 kb on + strand, within BT4235 at 5575.737 kb on + strand, within BT4235 at 5575.738 kb on - strand, within BT4235 at 5575.742 kb on - strand, within BT4235 at 5575.742 kb on - strand, within BT4235 at 5575.790 kb on + strand, within BT4235 at 5575.791 kb on - strand, within BT4235 at 5575.791 kb on - strand, within BT4235 at 5575.798 kb on - strand, within BT4235 at 5575.798 kb on - strand, within BT4235 at 5575.835 kb on - strand, within BT4235 at 5575.863 kb on + strand, within BT4235 at 5575.875 kb on + strand, within BT4235 at 5575.899 kb on + strand at 5575.903 kb on + strand at 5575.918 kb on - strand at 5575.920 kb on + strand at 5575.921 kb on - strand at 5575.938 kb on + strand at 5575.989 kb on + strand at 5576.005 kb on - strand at 5576.007 kb on - strand at 5576.013 kb on + strand at 5576.018 kb on - strand at 5576.084 kb on + strand at 5576.084 kb on + strand at 5576.086 kb on + strand at 5576.087 kb on - strand at 5576.109 kb on - strand at 5576.162 kb on - strand at 5576.221 kb on - strand at 5576.221 kb on - strand at 5576.240 kb on + strand at 5576.261 kb on + strand at 5576.266 kb on + strand at 5576.318 kb on + strand at 5576.318 kb on + strand at 5576.318 kb on + strand at 5576.319 kb on - strand at 5576.319 kb on - strand at 5576.325 kb on + strand at 5576.325 kb on + strand at 5576.326 kb on - strand at 5576.330 kb on - strand at 5576.344 kb on - strand at 5576.387 kb on + strand at 5576.388 kb on - strand at 5576.416 kb on + strand at 5576.416 kb on + strand at 5576.417 kb on - strand at 5576.417 kb on - strand at 5576.485 kb on + strand at 5576.561 kb on + strand at 5576.690 kb on + strand, within BT4236 at 5576.691 kb on - strand, within BT4236 at 5576.767 kb on + strand, within BT4236 at 5576.768 kb on - strand, within BT4236 at 5576.804 kb on - strand, within BT4236 at 5576.866 kb on - strand, within BT4236 at 5576.870 kb on + strand, within BT4236 at 5576.871 kb on - strand, within BT4236 at 5576.909 kb on + strand, within BT4236 at 5576.909 kb on + strand, within BT4236 at 5576.909 kb on + strand, within BT4236 at 5576.910 kb on - strand, within BT4236 at 5576.910 kb on - strand, within BT4236 at 5576.946 kb on - strand, within BT4236 at 5576.949 kb on + strand, within BT4236 at 5576.950 kb on - strand, within BT4236 at 5576.950 kb on - strand, within BT4236 at 5576.979 kb on + strand, within BT4236 at 5576.984 kb on + strand, within BT4236 at 5576.984 kb on + strand, within BT4236 at 5576.985 kb on - strand, within BT4236 at 5577.095 kb on + strand, within BT4236 at 5577.122 kb on - strand, within BT4236 at 5577.269 kb on - strand, within BT4236 at 5577.310 kb on + strand, within BT4236 at 5577.310 kb on + strand at 5577.311 kb on - strand, within BT4236 at 5577.378 kb on - strand, within BT4236 at 5577.379 kb on + strand, within BT4236 at 5577.422 kb on - strand, within BT4236 at 5577.497 kb on + strand, within BT4236 at 5577.497 kb on + strand, within BT4236 at 5577.497 kb on + strand, within BT4236 at 5577.500 kb on - strand, within BT4236 at 5577.701 kb on - strand, within BT4236 at 5577.770 kb on - strand, within BT4236 at 5577.783 kb on + strand, within BT4236 at 5577.790 kb on - strand, within BT4236 at 5577.911 kb on + strand, within BT4236 at 5577.923 kb on + strand, within BT4236 at 5577.979 kb on - strand, within BT4236 at 5577.991 kb on + strand, within BT4236 at 5577.992 kb on - strand, within BT4236 at 5578.113 kb on - strand, within BT4236 at 5578.115 kb on - strand, within BT4236 at 5578.118 kb on + strand, within BT4236 at 5578.173 kb on + strand, within BT4236 at 5578.603 kb on + strand, within BT4236 at 5578.603 kb on + strand, within BT4236 at 5578.604 kb on - strand, within BT4236 at 5578.613 kb on + strand, within BT4236 at 5578.614 kb on - strand, within BT4236 at 5578.614 kb on - strand, within BT4236 at 5578.614 kb on - strand, within BT4236 at 5578.623 kb on - strand at 5578.650 kb on - strand, within BT4236 at 5578.658 kb on + strand, within BT4236 at 5578.953 kb on + strand, within BT4236 at 5578.956 kb on - strand, within BT4236 at 5578.997 kb on + strand, within BT4236 at 5579.057 kb on + strand, within BT4236 at 5579.058 kb on - strand, within BT4236 at 5579.058 kb on - strand at 5579.171 kb on - strand, within BT4236 at 5579.197 kb on - strand, within BT4236 at 5579.197 kb on - strand, within BT4236 at 5579.215 kb on - strand, within BT4236 at 5579.225 kb on - strand, within BT4236 at 5579.231 kb on + strand, within BT4236 at 5579.231 kb on + strand, within BT4236 at 5579.232 kb on - strand, within BT4236 at 5579.232 kb on - strand, within BT4236 at 5579.247 kb on + strand, within BT4236 at 5579.247 kb on + strand, within BT4236 at 5579.248 kb on - strand, within BT4236 at 5579.320 kb on + strand, within BT4236 at 5579.320 kb on + strand, within BT4236 at 5579.557 kb on - strand, within BT4236 at 5579.557 kb on - strand at 5579.671 kb on - strand, within BT4236 at 5579.681 kb on - strand, within BT4236 at 5579.914 kb on + strand, within BT4236 at 5579.948 kb on + strand, within BT4236 at 5579.948 kb on + strand, within BT4236 at 5579.949 kb on - strand, within BT4236 at 5579.949 kb on - strand, within BT4236 at 5580.032 kb on + strand at 5580.032 kb on + strand at 5580.032 kb on + strand at 5580.032 kb on + strand at 5580.124 kb on + strand at 5580.137 kb on - strand at 5580.205 kb on + strand at 5580.252 kb on - strand at 5580.252 kb on - strand at 5580.252 kb on - strand at 5580.261 kb on + strand at 5580.279 kb on + strand at 5580.279 kb on + strand at 5580.279 kb on + strand at 5580.279 kb on + strand at 5580.280 kb on - strand at 5580.413 kb on - strand at 5580.416 kb on + strand at 5580.416 kb on + strand at 5580.417 kb on - strand at 5580.417 kb on - strand at 5580.417 kb on - strand at 5580.482 kb on - strand at 5580.799 kb on + strand, within BT4237 at 5580.801 kb on + strand, within BT4237 at 5580.802 kb on - strand, within BT4237 at 5580.805 kb on + strand, within BT4237 at 5580.808 kb on + strand, within BT4237 at 5580.817 kb on - strand, within BT4237 at 5580.860 kb on - strand, within BT4237 at 5580.875 kb on - strand, within BT4237 at 5580.946 kb on - strand, within BT4237 at 5580.953 kb on + strand, within BT4237 at 5581.026 kb on + strand, within BT4237 at 5581.027 kb on - strand, within BT4237 at 5581.133 kb on + strand, within BT4237 at 5581.248 kb on - strand at 5581.248 kb on - strand at 5581.251 kb on + strand at 5581.280 kb on - strand at 5581.280 kb on - strand at 5581.312 kb on + strand at 5581.313 kb on - strand at 5581.331 kb on - strand at 5581.331 kb on - strand at 5581.354 kb on - strand at 5581.399 kb on - strand at 5581.399 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage2;Mouse1 remove 5,575,320 + -0.8 5,575,321 - -0.1 5,575,323 + -2.3 5,575,323 + -2.4 5,575,338 + -1.3 5,575,386 + -0.4 5,575,445 + BT4235 0.19 +0.2 5,575,445 + BT4235 0.19 +0.6 5,575,446 - BT4235 0.19 -0.4 5,575,447 + BT4235 0.19 -0.0 5,575,448 - BT4235 0.19 -0.5 5,575,452 + BT4235 0.20 -0.6 5,575,452 + BT4235 0.20 -0.4 5,575,454 + BT4235 0.20 -3.1 5,575,477 - BT4235 0.24 -1.6 5,575,551 + BT4235 0.35 +0.5 5,575,551 + BT4235 0.35 -0.7 5,575,555 - BT4235 0.36 +0.4 5,575,591 + BT4235 0.42 -2.0 5,575,664 + BT4235 0.53 +0.2 5,575,664 + BT4235 0.53 -2.4 5,575,698 + BT4235 0.58 -0.0 5,575,702 - BT4235 0.59 -0.6 5,575,722 - BT4235 0.62 -0.2 5,575,726 + BT4235 0.63 -1.6 5,575,726 + BT4235 0.63 -0.2 5,575,727 - BT4235 0.63 -2.7 5,575,730 + BT4235 0.63 -1.7 5,575,730 + BT4235 0.63 +0.6 5,575,731 - BT4235 0.64 +0.2 5,575,731 - BT4235 0.64 -0.8 5,575,734 + BT4235 0.64 +0.8 5,575,735 - BT4235 0.64 -1.6 5,575,737 + BT4235 0.64 -1.4 5,575,737 + BT4235 0.64 -0.3 5,575,738 - BT4235 0.65 -2.0 5,575,742 - BT4235 0.65 -1.5 5,575,742 - BT4235 0.65 -1.7 5,575,790 + BT4235 0.73 -0.9 5,575,791 - BT4235 0.73 +0.1 5,575,791 - BT4235 0.73 -1.8 5,575,798 - BT4235 0.74 +1.3 5,575,798 - BT4235 0.74 -0.6 5,575,835 - BT4235 0.80 -1.8 5,575,863 + BT4235 0.84 -2.0 5,575,875 + BT4235 0.86 -0.1 5,575,899 + -4.1 5,575,903 + -1.0 5,575,918 - +1.0 5,575,920 + -1.4 5,575,921 - -0.4 5,575,938 + -1.8 5,575,989 + -0.0 5,576,005 - -0.0 5,576,007 - +0.6 5,576,013 + -0.0 5,576,018 - -1.2 5,576,084 + -1.6 5,576,084 + -0.4 5,576,086 + -0.0 5,576,087 - -0.3 5,576,109 - -0.0 5,576,162 - -1.1 5,576,221 - -0.6 5,576,221 - -0.0 5,576,240 + -0.6 5,576,261 + -1.0 5,576,266 + -0.2 5,576,318 + -1.4 5,576,318 + -1.5 5,576,318 + -1.2 5,576,319 - -1.3 5,576,319 - +1.8 5,576,325 + -0.6 5,576,325 + +0.4 5,576,326 - +0.1 5,576,330 - -1.0 5,576,344 - +0.1 5,576,387 + +0.4 5,576,388 - -0.5 5,576,416 + -0.4 5,576,416 + +2.0 5,576,417 - -1.1 5,576,417 - -0.8 5,576,485 + +0.4 5,576,561 + -0.4 5,576,690 + BT4236 0.10 +1.0 5,576,691 - BT4236 0.10 +1.1 5,576,767 + BT4236 0.12 +1.0 5,576,768 - BT4236 0.12 -2.0 5,576,804 - BT4236 0.13 -1.4 5,576,866 - BT4236 0.14 -0.4 5,576,870 + BT4236 0.15 +0.2 5,576,871 - BT4236 0.15 -0.0 5,576,909 + BT4236 0.15 +0.1 5,576,909 + BT4236 0.15 -1.1 5,576,909 + BT4236 0.15 -1.6 5,576,910 - BT4236 0.15 -2.9 5,576,910 - BT4236 0.15 -0.6 5,576,946 - BT4236 0.16 -1.6 5,576,949 + BT4236 0.16 -1.2 5,576,950 - BT4236 0.16 +0.4 5,576,950 - BT4236 0.16 -0.4 5,576,979 + BT4236 0.17 -2.0 5,576,984 + BT4236 0.17 -0.0 5,576,984 + BT4236 0.17 -0.0 5,576,985 - BT4236 0.17 -1.7 5,577,095 + BT4236 0.20 -1.0 5,577,122 - BT4236 0.21 +2.2 5,577,269 - BT4236 0.24 -0.5 5,577,310 + BT4236 0.25 +0.4 5,577,310 + -1.6 5,577,311 - BT4236 0.25 -1.6 5,577,378 - BT4236 0.27 -0.5 5,577,379 + BT4236 0.27 -1.2 5,577,422 - BT4236 0.28 -1.0 5,577,497 + BT4236 0.30 -0.2 5,577,497 + BT4236 0.30 +0.4 5,577,497 + BT4236 0.30 -0.9 5,577,500 - BT4236 0.30 -0.3 5,577,701 - BT4236 0.34 -0.6 5,577,770 - BT4236 0.36 +1.3 5,577,783 + BT4236 0.36 +0.2 5,577,790 - BT4236 0.37 -0.0 5,577,911 + BT4236 0.40 -1.6 5,577,923 + BT4236 0.40 -0.4 5,577,979 - BT4236 0.41 +1.0 5,577,991 + BT4236 0.41 -2.0 5,577,992 - BT4236 0.41 -1.0 5,578,113 - BT4236 0.44 +0.5 5,578,115 - BT4236 0.44 -2.0 5,578,118 + BT4236 0.45 +1.0 5,578,173 + BT4236 0.46 +1.0 5,578,603 + BT4236 0.56 +1.0 5,578,603 + BT4236 0.56 +1.4 5,578,604 - BT4236 0.56 -0.0 5,578,613 + BT4236 0.56 -0.2 5,578,614 - BT4236 0.56 -0.3 5,578,614 - BT4236 0.56 +0.9 5,578,614 - BT4236 0.56 +0.0 5,578,623 - -1.6 5,578,650 - BT4236 0.57 +0.3 5,578,658 + BT4236 0.58 +0.4 5,578,953 + BT4236 0.65 +1.2 5,578,956 - BT4236 0.65 +0.4 5,578,997 + BT4236 0.66 +0.1 5,579,057 + BT4236 0.67 +0.6 5,579,058 - BT4236 0.67 -1.0 5,579,058 - +1.0 5,579,171 - BT4236 0.70 -0.8 5,579,197 - BT4236 0.70 -0.7 5,579,197 - BT4236 0.70 -0.2 5,579,215 - BT4236 0.71 -1.4 5,579,225 - BT4236 0.71 -1.0 5,579,231 + BT4236 0.71 +5.2 5,579,231 + BT4236 0.71 -0.9 5,579,232 - BT4236 0.71 -1.9 5,579,232 - BT4236 0.71 -0.0 5,579,247 + BT4236 0.72 -0.0 5,579,247 + BT4236 0.72 -0.0 5,579,248 - BT4236 0.72 +0.3 5,579,320 + BT4236 0.73 -0.8 5,579,320 + BT4236 0.73 -0.3 5,579,557 - BT4236 0.79 -1.8 5,579,557 - -0.6 5,579,671 - BT4236 0.82 +0.7 5,579,681 - BT4236 0.82 +0.3 5,579,914 + BT4236 0.88 -0.8 5,579,948 + BT4236 0.89 -2.6 5,579,948 + BT4236 0.89 +2.0 5,579,949 - BT4236 0.89 -0.3 5,579,949 - BT4236 0.89 +0.2 5,580,032 + +0.8 5,580,032 + -1.6 5,580,032 + -0.0 5,580,032 + +0.5 5,580,124 + +1.3 5,580,137 - -0.0 5,580,205 + -1.6 5,580,252 - -1.5 5,580,252 - -0.3 5,580,252 - -1.5 5,580,261 + +0.2 5,580,279 + -1.1 5,580,279 + -0.0 5,580,279 + +2.0 5,580,279 + -1.6 5,580,280 - -2.2 5,580,413 - -1.7 5,580,416 + -1.7 5,580,416 + -0.5 5,580,417 - +0.5 5,580,417 - -0.3 5,580,417 - +0.6 5,580,482 - -1.0 5,580,799 + BT4237 0.40 -2.0 5,580,801 + BT4237 0.41 -2.0 5,580,802 - BT4237 0.41 -1.7 5,580,805 + BT4237 0.41 -2.1 5,580,808 + BT4237 0.41 -3.0 5,580,817 - BT4237 0.43 -0.9 5,580,860 - BT4237 0.48 -2.9 5,580,875 - BT4237 0.50 -1.6 5,580,946 - BT4237 0.59 -2.2 5,580,953 + BT4237 0.59 -1.6 5,581,026 + BT4237 0.68 -1.8 5,581,027 - BT4237 0.69 +0.4 5,581,133 + BT4237 0.82 -1.4 5,581,248 - -2.2 5,581,248 - +1.0 5,581,251 + +1.0 5,581,280 - +0.4 5,581,280 - +0.4 5,581,312 + -0.3 5,581,313 - +0.4 5,581,331 - -0.2 5,581,331 - +1.3 5,581,354 - +0.3 5,581,399 - -0.8 5,581,399 - -0.6
Or see this region's nucleotide sequence