Experiment: Post-colonization (Day 12) - Cage2;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0303 and BT0304 are separated by 271 nucleotides BT0304 and BT0305 are separated by 3 nucleotides
BT0303: BT0303 - putative patatin-like phospholipase (NCBI ptt file), at 360,384 to 362,600
BT0303
BT0304: BT0304 - acriflavine resistance protein A precursor (NCBI ptt file), at 362,872 to 364,107
BT0304
BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215
BT0305
Position (kb) 362
363
364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 361.985 kb on + strand, within BT0303 at 361.986 kb on - strand, within BT0303 at 362.068 kb on - strand, within BT0303 at 362.397 kb on - strand at 362.416 kb on - strand at 362.469 kb on - strand at 362.537 kb on - strand at 362.650 kb on - strand at 362.725 kb on - strand at 362.855 kb on - strand at 362.934 kb on - strand at 362.937 kb on - strand at 363.058 kb on + strand, within BT0304 at 363.058 kb on + strand, within BT0304 at 363.095 kb on + strand, within BT0304 at 363.096 kb on - strand, within BT0304 at 363.277 kb on - strand, within BT0304 at 363.290 kb on - strand, within BT0304 at 363.341 kb on - strand, within BT0304 at 363.442 kb on - strand, within BT0304 at 363.505 kb on - strand, within BT0304 at 363.509 kb on + strand, within BT0304 at 363.630 kb on - strand, within BT0304 at 363.649 kb on - strand, within BT0304 at 363.775 kb on - strand, within BT0304 at 363.861 kb on + strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.862 kb on - strand, within BT0304 at 363.867 kb on + strand, within BT0304 at 363.877 kb on - strand, within BT0304 at 363.886 kb on - strand, within BT0304 at 363.903 kb on + strand, within BT0304 at 364.130 kb on + strand at 364.343 kb on - strand at 364.343 kb on - strand at 364.401 kb on - strand at 364.491 kb on + strand, within BT0305 at 364.524 kb on - strand, within BT0305 at 364.546 kb on - strand, within BT0305 at 364.650 kb on + strand, within BT0305 at 364.660 kb on + strand, within BT0305 at 364.661 kb on - strand, within BT0305 at 364.665 kb on + strand, within BT0305 at 364.770 kb on - strand, within BT0305 at 364.988 kb on - strand, within BT0305 at 364.988 kb on - strand, within BT0305 at 365.019 kb on - strand, within BT0305
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage2;Mouse1 remove 361,985 + BT0303 0.72 -0.0 361,986 - BT0303 0.72 -1.6 362,068 - BT0303 0.76 -2.2 362,397 - -0.0 362,416 - -1.6 362,469 - -0.6 362,537 - -0.0 362,650 - +0.3 362,725 - -0.6 362,855 - -0.0 362,934 - -1.6 362,937 - +0.3 363,058 + BT0304 0.15 -0.1 363,058 + BT0304 0.15 -0.6 363,095 + BT0304 0.18 -2.0 363,096 - BT0304 0.18 -3.5 363,277 - BT0304 0.33 -0.2 363,290 - BT0304 0.34 -0.8 363,341 - BT0304 0.38 -0.3 363,442 - BT0304 0.46 -0.2 363,505 - BT0304 0.51 -1.8 363,509 + BT0304 0.52 -1.5 363,630 - BT0304 0.61 -1.6 363,649 - BT0304 0.63 -0.0 363,775 - BT0304 0.73 -1.4 363,861 + BT0304 0.80 -0.0 363,862 - BT0304 0.80 -1.6 363,862 - BT0304 0.80 -0.7 363,862 - BT0304 0.80 -0.8 363,867 + BT0304 0.81 -1.9 363,877 - BT0304 0.81 -2.9 363,886 - BT0304 0.82 +0.3 363,903 + BT0304 0.83 -0.2 364,130 + -1.1 364,343 - -0.7 364,343 - -0.6 364,401 - -2.7 364,491 + BT0305 0.12 -1.9 364,524 - BT0305 0.13 -1.2 364,546 - BT0305 0.14 -1.6 364,650 + BT0305 0.17 +1.4 364,660 + BT0305 0.18 +0.4 364,661 - BT0305 0.18 -0.1 364,665 + BT0305 0.18 -3.1 364,770 - BT0305 0.21 -1.8 364,988 - BT0305 0.28 +1.0 364,988 - BT0305 0.28 -0.0 365,019 - BT0305 0.29 -0.6
Or see this region's nucleotide sequence