Strain Fitness in Sinorhizobium meliloti 1021 around SMc01710

Experiment: methyl 3-keto-a-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01711 and SMc01710 are separated by 118 nucleotidesSMc01710 and SMc01709 overlap by 209 nucleotidesSMc01709 and SMc01708 are separated by 662 nucleotides SMc01711: SMc01711 - hypothetical protein, at 493,804 to 496,527 SMc01711 SMc01710: SMc01710 - hypothetical protein, at 496,646 to 501,478 SMc01710 SMc01709: SMc01709 - signal peptide protein, at 501,270 to 501,773 SMc01709 SMc01708: SMc01708 - hypothetical protein, at 502,436 to 506,311 SMc01708 Position (kb) 496 497 498 499 500 501 502Strain fitness (log2 ratio) -2 -1 0 1 2at 495.674 kb on - strand, within SMc01711at 495.865 kb on + strand, within SMc01711at 495.866 kb on - strand, within SMc01711at 495.866 kb on - strand, within SMc01711at 495.946 kb on - strand, within SMc01711at 495.967 kb on - strand, within SMc01711at 496.179 kb on + strand, within SMc01711at 496.289 kb on - strandat 496.289 kb on - strandat 496.309 kb on - strandat 496.360 kb on + strandat 496.360 kb on + strandat 496.360 kb on + strandat 496.360 kb on + strandat 496.361 kb on - strandat 496.369 kb on + strandat 496.369 kb on + strandat 496.369 kb on + strandat 496.369 kb on + strandat 496.370 kb on - strandat 496.370 kb on - strandat 496.370 kb on - strandat 496.525 kb on + strandat 496.611 kb on + strandat 496.632 kb on + strandat 496.632 kb on + strandat 496.769 kb on + strandat 496.770 kb on - strandat 496.779 kb on + strandat 496.969 kb on + strandat 496.970 kb on - strandat 496.983 kb on + strandat 497.387 kb on - strand, within SMc01710at 497.387 kb on - strand, within SMc01710at 497.432 kb on + strand, within SMc01710at 497.432 kb on + strand, within SMc01710at 497.452 kb on + strand, within SMc01710at 497.452 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.462 kb on + strand, within SMc01710at 497.463 kb on - strandat 497.463 kb on - strand, within SMc01710at 497.463 kb on - strand, within SMc01710at 497.463 kb on - strand, within SMc01710at 497.463 kb on - strand, within SMc01710at 497.463 kb on - strand, within SMc01710at 497.614 kb on + strand, within SMc01710at 497.614 kb on + strand, within SMc01710at 497.615 kb on - strand, within SMc01710at 497.615 kb on - strand, within SMc01710at 497.615 kb on - strand, within SMc01710at 497.615 kb on - strand, within SMc01710at 497.668 kb on + strand, within SMc01710at 497.668 kb on + strand, within SMc01710at 497.669 kb on - strand, within SMc01710at 497.702 kb on + strand, within SMc01710at 498.092 kb on + strand, within SMc01710at 498.092 kb on + strand, within SMc01710at 498.146 kb on + strand, within SMc01710at 498.146 kb on + strand, within SMc01710at 498.146 kb on + strand, within SMc01710at 498.146 kb on + strand, within SMc01710at 498.146 kb on + strand, within SMc01710at 498.147 kb on - strand, within SMc01710at 498.147 kb on - strand, within SMc01710at 498.147 kb on - strand, within SMc01710at 498.147 kb on - strand, within SMc01710at 498.276 kb on - strand, within SMc01710at 498.289 kb on + strand, within SMc01710at 498.407 kb on + strand, within SMc01710at 498.481 kb on + strand, within SMc01710at 498.481 kb on + strand, within SMc01710at 498.481 kb on + strand, within SMc01710at 498.482 kb on - strand, within SMc01710at 498.482 kb on - strand, within SMc01710at 498.483 kb on + strand, within SMc01710at 498.483 kb on + strand, within SMc01710at 498.483 kb on + strand, within SMc01710at 498.484 kb on - strand, within SMc01710at 498.484 kb on - strand, within SMc01710at 498.484 kb on - strand, within SMc01710at 498.484 kb on - strand, within SMc01710at 498.488 kb on + strand, within SMc01710at 498.605 kb on + strand, within SMc01710at 498.605 kb on + strand, within SMc01710at 498.605 kb on + strand, within SMc01710at 498.606 kb on - strand, within SMc01710at 498.607 kb on + strand, within SMc01710at 498.607 kb on + strand, within SMc01710at 498.607 kb on + strand, within SMc01710at 498.607 kb on + strand, within SMc01710at 498.608 kb on - strand, within SMc01710at 498.608 kb on - strand, within SMc01710at 498.776 kb on + strand, within SMc01710at 498.776 kb on + strand, within SMc01710at 498.777 kb on - strand, within SMc01710at 498.777 kb on - strand, within SMc01710at 498.777 kb on - strand, within SMc01710at 498.777 kb on - strand, within SMc01710at 498.812 kb on + strand, within SMc01710at 498.928 kb on + strand, within SMc01710at 498.929 kb on - strand, within SMc01710at 499.163 kb on + strand, within SMc01710at 499.194 kb on + strand, within SMc01710at 499.195 kb on - strand, within SMc01710at 499.195 kb on - strand, within SMc01710at 499.595 kb on + strand, within SMc01710at 499.596 kb on - strand, within SMc01710at 499.596 kb on - strand, within SMc01710at 499.869 kb on + strand, within SMc01710at 499.869 kb on + strand, within SMc01710at 499.869 kb on + strand, within SMc01710at 499.928 kb on + strand, within SMc01710at 499.929 kb on - strand, within SMc01710at 499.988 kb on + strand, within SMc01710at 500.113 kb on + strand, within SMc01710at 500.138 kb on + strand, within SMc01710at 500.138 kb on + strand, within SMc01710at 500.144 kb on + strand, within SMc01710at 500.145 kb on - strand, within SMc01710at 500.145 kb on - strand, within SMc01710at 500.212 kb on + strand, within SMc01710at 500.213 kb on - strand, within SMc01710at 500.213 kb on - strand, within SMc01710at 500.405 kb on - strand, within SMc01710at 500.405 kb on - strand, within SMc01710at 500.470 kb on - strand, within SMc01710at 500.590 kb on + strand, within SMc01710at 500.591 kb on - strand, within SMc01710at 500.591 kb on - strand, within SMc01710at 500.632 kb on + strand, within SMc01710at 500.672 kb on - strand, within SMc01710at 500.672 kb on - strand, within SMc01710at 500.702 kb on + strand, within SMc01710at 500.702 kb on + strand, within SMc01710at 500.703 kb on - strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.750 kb on + strand, within SMc01710at 500.751 kb on - strand, within SMc01710at 500.751 kb on - strand, within SMc01710at 500.840 kb on + strand, within SMc01710at 500.840 kb on + strand, within SMc01710at 501.112 kb on + strandat 501.113 kb on - strandat 501.285 kb on - strandat 501.285 kb on - strandat 501.536 kb on + strand, within SMc01709at 501.537 kb on - strand, within SMc01709at 501.627 kb on + strand, within SMc01709at 501.628 kb on - strand, within SMc01709at 501.743 kb on + strandat 501.743 kb on + strandat 501.771 kb on + strandat 501.772 kb on - strandat 501.838 kb on + strandat 501.838 kb on + strandat 501.839 kb on - strandat 501.839 kb on - strandat 501.839 kb on - strandat 501.848 kb on + strandat 501.849 kb on - strandat 501.849 kb on - strandat 502.214 kb on - strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.259 kb on + strandat 502.260 kb on - strandat 502.260 kb on - strandat 502.324 kb on + strandat 502.325 kb on - strandat 502.353 kb on + strandat 502.353 kb on + strandat 502.401 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C)
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495,674 - SMc01711 0.69 -1.7
495,865 + SMc01711 0.76 +1.0
495,866 - SMc01711 0.76 -0.7
495,866 - SMc01711 0.76 -0.3
495,946 - SMc01711 0.79 +0.5
495,967 - SMc01711 0.79 -0.1
496,179 + SMc01711 0.87 +0.4
496,289 - +1.7
496,289 - -0.3
496,309 - -0.1
496,360 + -0.7
496,360 + -2.6
496,360 + -0.8
496,360 + -0.4
496,361 - -0.9
496,369 + +0.4
496,369 + -0.4
496,369 + +0.3
496,369 + -0.2
496,370 - -0.4
496,370 - +0.8
496,370 - -0.8
496,525 + -1.1
496,611 + -0.3
496,632 + -0.1
496,632 + +0.6
496,769 + -1.3
496,770 - -0.5
496,779 + +0.2
496,969 + -0.3
496,970 - +0.2
496,983 + -0.4
497,387 - SMc01710 0.15 +0.2
497,387 - SMc01710 0.15 +0.3
497,432 + SMc01710 0.16 +0.7
497,432 + SMc01710 0.16 -2.4
497,452 + SMc01710 0.17 -1.7
497,452 + SMc01710 0.17 -0.6
497,462 + SMc01710 0.17 +0.1
497,462 + SMc01710 0.17 +1.1
497,462 + SMc01710 0.17 -1.5
497,462 + SMc01710 0.17 +1.9
497,462 + SMc01710 0.17 -0.9
497,462 + SMc01710 0.17 -0.3
497,462 + SMc01710 0.17 -0.6
497,462 + SMc01710 0.17 -0.3
497,463 - +0.1
497,463 - SMc01710 0.17 -0.2
497,463 - SMc01710 0.17 -0.3
497,463 - SMc01710 0.17 -2.0
497,463 - SMc01710 0.17 -2.3
497,463 - SMc01710 0.17 +0.2
497,614 + SMc01710 0.20 +0.1
497,614 + SMc01710 0.20 +0.6
497,615 - SMc01710 0.20 +0.0
497,615 - SMc01710 0.20 +0.2
497,615 - SMc01710 0.20 +1.7
497,615 - SMc01710 0.20 -0.1
497,668 + SMc01710 0.21 -0.4
497,668 + SMc01710 0.21 -0.7
497,669 - SMc01710 0.21 -1.0
497,702 + SMc01710 0.22 +1.1
498,092 + SMc01710 0.30 -0.8
498,092 + SMc01710 0.30 -0.5
498,146 + SMc01710 0.31 -0.3
498,146 + SMc01710 0.31 -0.3
498,146 + SMc01710 0.31 +0.2
498,146 + SMc01710 0.31 -1.1
498,146 + SMc01710 0.31 -1.3
498,147 - SMc01710 0.31 -0.2
498,147 - SMc01710 0.31 +0.1
498,147 - SMc01710 0.31 -0.1
498,147 - SMc01710 0.31 -0.3
498,276 - SMc01710 0.34 -0.7
498,289 + SMc01710 0.34 -0.2
498,407 + SMc01710 0.36 +1.4
498,481 + SMc01710 0.38 -0.4
498,481 + SMc01710 0.38 -0.2
498,481 + SMc01710 0.38 -0.4
498,482 - SMc01710 0.38 -0.8
498,482 - SMc01710 0.38 +0.1
498,483 + SMc01710 0.38 +1.1
498,483 + SMc01710 0.38 +0.5
498,483 + SMc01710 0.38 +0.7
498,484 - SMc01710 0.38 +0.1
498,484 - SMc01710 0.38 -0.0
498,484 - SMc01710 0.38 +0.2
498,484 - SMc01710 0.38 -0.3
498,488 + SMc01710 0.38 -0.6
498,605 + SMc01710 0.41 -0.4
498,605 + SMc01710 0.41 +0.5
498,605 + SMc01710 0.41 -1.4
498,606 - SMc01710 0.41 -0.3
498,607 + SMc01710 0.41 +0.1
498,607 + SMc01710 0.41 -0.7
498,607 + SMc01710 0.41 +0.1
498,607 + SMc01710 0.41 +0.1
498,608 - SMc01710 0.41 +1.0
498,608 - SMc01710 0.41 -0.9
498,776 + SMc01710 0.44 -0.4
498,776 + SMc01710 0.44 +0.6
498,777 - SMc01710 0.44 +0.0
498,777 - SMc01710 0.44 -1.0
498,777 - SMc01710 0.44 -0.3
498,777 - SMc01710 0.44 -0.1
498,812 + SMc01710 0.45 -0.5
498,928 + SMc01710 0.47 +0.4
498,929 - SMc01710 0.47 -0.4
499,163 + SMc01710 0.52 +0.1
499,194 + SMc01710 0.53 +0.6
499,195 - SMc01710 0.53 -0.1
499,195 - SMc01710 0.53 -0.5
499,595 + SMc01710 0.61 +1.6
499,596 - SMc01710 0.61 +0.1
499,596 - SMc01710 0.61 +0.3
499,869 + SMc01710 0.67 -0.7
499,869 + SMc01710 0.67 -0.2
499,869 + SMc01710 0.67 -0.5
499,928 + SMc01710 0.68 -0.4
499,929 - SMc01710 0.68 +0.0
499,988 + SMc01710 0.69 +0.5
500,113 + SMc01710 0.72 -0.4
500,138 + SMc01710 0.72 -1.1
500,138 + SMc01710 0.72 -0.2
500,144 + SMc01710 0.72 +0.1
500,145 - SMc01710 0.72 +0.9
500,145 - SMc01710 0.72 +1.6
500,212 + SMc01710 0.74 -0.9
500,213 - SMc01710 0.74 -0.7
500,213 - SMc01710 0.74 +1.1
500,405 - SMc01710 0.78 -0.6
500,405 - SMc01710 0.78 +1.0
500,470 - SMc01710 0.79 +0.7
500,590 + SMc01710 0.82 -2.0
500,591 - SMc01710 0.82 -0.1
500,591 - SMc01710 0.82 -0.5
500,632 + SMc01710 0.82 +0.4
500,672 - SMc01710 0.83 +0.1
500,672 - SMc01710 0.83 -0.9
500,702 + SMc01710 0.84 +2.1
500,702 + SMc01710 0.84 +0.3
500,703 - SMc01710 0.84 -1.2
500,750 + SMc01710 0.85 -1.8
500,750 + SMc01710 0.85 +0.0
500,750 + SMc01710 0.85 +0.2
500,750 + SMc01710 0.85 -1.3
500,750 + SMc01710 0.85 -2.3
500,751 - SMc01710 0.85 -1.0
500,751 - SMc01710 0.85 +0.2
500,840 + SMc01710 0.87 +0.2
500,840 + SMc01710 0.87 -1.8
501,112 + +0.3
501,113 - +0.3
501,285 - +0.0
501,285 - +0.7
501,536 + SMc01709 0.53 +1.7
501,537 - SMc01709 0.53 -0.2
501,627 + SMc01709 0.71 -0.1
501,628 - SMc01709 0.71 -0.2
501,743 + -1.2
501,743 + +0.7
501,771 + -0.2
501,772 - -0.6
501,838 + +0.6
501,838 + -0.0
501,839 - -0.1
501,839 - -0.8
501,839 - +0.8
501,848 + -0.1
501,849 - -0.9
501,849 - +0.2
502,214 - +0.1
502,259 + -0.2
502,259 + +1.7
502,259 + +1.4
502,259 + +0.1
502,259 + +1.7
502,259 + -0.0
502,260 - +0.1
502,260 - +0.4
502,324 + -0.3
502,325 - -0.1
502,353 + +0.1
502,353 + -0.8
502,401 + +0.7

Or see this region's nucleotide sequence