Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01115 and SMc01114 are separated by 4 nucleotides SMc01114 and SMc01113 are separated by 16 nucleotides SMc01113 and SMc01112 are separated by 12 nucleotides
SMc01115: SMc01115 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 439,370 to 440,788
SMc01115
SMc01114: SMc01114 - phoH-like protein, at 440,793 to 441,848
SMc01114
SMc01113: SMc01113 - hypothetical protein, at 441,865 to 442,371
SMc01113
SMc01112: SMc01112 - hypothetical protein, at 442,384 to 443,547
SMc01112
Position (kb) 440
441
442 Strain fitness (log2 ratio) -2
-1
0
1 at 439.820 kb on + strand, within SMc01115 at 439.821 kb on - strand, within SMc01115 at 439.945 kb on - strand, within SMc01115 at 439.949 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.155 kb on + strand, within SMc01115 at 440.156 kb on - strand, within SMc01115 at 440.156 kb on - strand, within SMc01115 at 440.193 kb on + strand, within SMc01115 at 440.193 kb on + strand, within SMc01115 at 440.194 kb on - strand, within SMc01115 at 440.229 kb on - strand, within SMc01115 at 440.229 kb on - strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.435 kb on + strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.436 kb on - strand, within SMc01115 at 440.455 kb on + strand, within SMc01115 at 440.456 kb on - strand, within SMc01115 at 440.557 kb on - strand, within SMc01115 at 441.071 kb on + strand, within SMc01114 at 441.124 kb on + strand, within SMc01114 at 441.222 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.288 kb on + strand, within SMc01114 at 441.423 kb on + strand, within SMc01114 at 441.798 kb on + strand at 441.798 kb on + strand at 442.370 kb on - strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.461 kb on + strand at 442.462 kb on - strand at 442.462 kb on - strand at 442.462 kb on - strand at 442.464 kb on + strand at 442.713 kb on + strand, within SMc01112 at 442.774 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.831 kb on + strand, within SMc01112 at 442.832 kb on - strand, within SMc01112 at 442.832 kb on - strand, within SMc01112
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 439,820 + SMc01115 0.32 -0.2 439,821 - SMc01115 0.32 -0.9 439,945 - SMc01115 0.41 +0.1 439,949 + SMc01115 0.41 +0.1 440,155 + SMc01115 0.55 -0.6 440,155 + SMc01115 0.55 -0.2 440,155 + SMc01115 0.55 +0.6 440,156 - SMc01115 0.55 +0.1 440,156 - SMc01115 0.55 +0.5 440,193 + SMc01115 0.58 +0.1 440,193 + SMc01115 0.58 -1.8 440,194 - SMc01115 0.58 +0.2 440,229 - SMc01115 0.61 +0.1 440,229 - SMc01115 0.61 +0.3 440,435 + SMc01115 0.75 -0.1 440,435 + SMc01115 0.75 -0.0 440,435 + SMc01115 0.75 -1.0 440,435 + SMc01115 0.75 -0.5 440,436 - SMc01115 0.75 +0.3 440,436 - SMc01115 0.75 +0.1 440,436 - SMc01115 0.75 +0.1 440,436 - SMc01115 0.75 +0.7 440,436 - SMc01115 0.75 -0.8 440,455 + SMc01115 0.76 +0.1 440,456 - SMc01115 0.77 +1.0 440,557 - SMc01115 0.84 -0.1 441,071 + SMc01114 0.26 -0.9 441,124 + SMc01114 0.31 -0.5 441,222 + SMc01114 0.41 -0.2 441,288 + SMc01114 0.47 -1.2 441,288 + SMc01114 0.47 -0.4 441,288 + SMc01114 0.47 -0.5 441,423 + SMc01114 0.60 -0.1 441,798 + -0.3 441,798 + +0.7 442,370 - -0.2 442,461 + -1.0 442,461 + -0.0 442,461 + +0.6 442,461 + +0.5 442,462 - +0.6 442,462 - -0.1 442,462 - +0.1 442,464 + -0.4 442,713 + SMc01112 0.28 +0.2 442,774 + SMc01112 0.34 +0.6 442,831 + SMc01112 0.38 -0.9 442,831 + SMc01112 0.38 +0.1 442,831 + SMc01112 0.38 +0.5 442,831 + SMc01112 0.38 -1.6 442,831 + SMc01112 0.38 -0.1 442,831 + SMc01112 0.38 +1.5 442,832 - SMc01112 0.38 -0.6 442,832 - SMc01112 0.38 +0.5
Or see this region's nucleotide sequence