Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00387 and SMc00388 are separated by 97 nucleotides SMc00388 and SMc00389 are separated by 97 nucleotides SMc00389 and SMc00390 are separated by 4 nucleotides
SMc00387: SMc00387 - aromatic amino acid aminotransferase, at 339,573 to 340,742
SMc00387
SMc00388: SMc00388 - hypothetical protein, at 340,840 to 341,901
SMc00388
SMc00389: SMc00389 - hypothetical protein, at 341,999 to 342,586
SMc00389
SMc00390: SMc00390 - hypothetical protein, at 342,591 to 342,920
SMc00390
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.907 kb on + strand, within SMc00387 at 340.114 kb on + strand, within SMc00387 at 340.275 kb on - strand, within SMc00387 at 340.315 kb on + strand, within SMc00387 at 340.549 kb on + strand, within SMc00387 at 340.549 kb on + strand, within SMc00387 at 340.550 kb on - strand, within SMc00387 at 340.550 kb on - strand, within SMc00387 at 340.550 kb on - strand, within SMc00387 at 340.645 kb on - strand at 340.776 kb on + strand at 340.776 kb on + strand at 340.777 kb on - strand at 340.993 kb on + strand, within SMc00388 at 341.053 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.071 kb on - strand, within SMc00388 at 341.103 kb on + strand, within SMc00388 at 341.427 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.429 kb on + strand, within SMc00388 at 341.430 kb on - strand, within SMc00388 at 341.430 kb on - strand, within SMc00388 at 341.435 kb on + strand, within SMc00388 at 341.435 kb on + strand, within SMc00388 at 341.436 kb on - strand, within SMc00388 at 341.796 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.798 kb on + strand at 341.799 kb on - strand at 341.934 kb on - strand at 342.060 kb on + strand, within SMc00389 at 342.061 kb on - strand, within SMc00389 at 342.190 kb on - strand, within SMc00389 at 342.269 kb on - strand, within SMc00389 at 342.569 kb on + strand at 342.629 kb on - strand, within SMc00390 at 342.652 kb on + strand, within SMc00390 at 342.653 kb on - strand, within SMc00390 at 342.653 kb on - strand, within SMc00390 at 342.653 kb on - strand, within SMc00390
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 339,907 + SMc00387 0.29 -0.1 340,114 + SMc00387 0.46 +0.0 340,275 - SMc00387 0.60 -0.8 340,315 + SMc00387 0.63 +0.3 340,549 + SMc00387 0.83 +0.2 340,549 + SMc00387 0.83 -0.2 340,550 - SMc00387 0.84 -1.0 340,550 - SMc00387 0.84 +0.4 340,550 - SMc00387 0.84 +1.8 340,645 - +0.0 340,776 + -0.5 340,776 + +0.1 340,777 - -1.4 340,993 + SMc00388 0.14 -0.3 341,053 - SMc00388 0.20 +0.4 341,071 - SMc00388 0.22 +0.4 341,071 - SMc00388 0.22 -0.5 341,071 - SMc00388 0.22 +0.6 341,103 + SMc00388 0.25 +1.7 341,427 + SMc00388 0.55 -0.5 341,429 + SMc00388 0.55 +0.4 341,429 + SMc00388 0.55 +0.3 341,429 + SMc00388 0.55 -0.5 341,429 + SMc00388 0.55 +0.3 341,430 - SMc00388 0.56 -0.4 341,430 - SMc00388 0.56 +0.9 341,435 + SMc00388 0.56 +0.2 341,435 + SMc00388 0.56 +0.6 341,436 - SMc00388 0.56 +1.4 341,796 + -0.1 341,798 + -0.4 341,798 + +0.3 341,798 + -0.4 341,798 + -1.7 341,798 + -2.9 341,798 + -0.2 341,798 + -0.0 341,798 + +0.1 341,798 + +0.2 341,799 - +0.2 341,934 - -1.2 342,060 + SMc00389 0.10 -0.0 342,061 - SMc00389 0.11 -0.3 342,190 - SMc00389 0.32 +0.0 342,269 - SMc00389 0.46 +1.1 342,569 + -0.2 342,629 - SMc00390 0.12 -0.3 342,652 + SMc00390 0.18 +0.9 342,653 - SMc00390 0.19 +0.5 342,653 - SMc00390 0.19 -0.0 342,653 - SMc00390 0.19 -0.0
Or see this region's nucleotide sequence