Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0271 and SMa0273 are separated by 29 nucleotides SMa0273 and SMa0275 are separated by 120 nucleotides SMa0275 and SMa0277 are separated by 169 nucleotides
SMa0270: SMa0270 - ABC transporter ATP-binding protein, at 151,172 to 152,764
SMa0270
SMa0271: SMa0271 - ABC transporter permease, at 152,730 to 153,725
SMa0271
SMa0273: SMa0273 - ABC transporter substrate-binding protein, at 153,755 to 154,720
SMa0273
SMa0275: SMa0275 - hypothetical protein, at 154,841 to 155,428
SMa0275
SMa0277: SMa0277 - hypothetical protein, at 155,598 to 155,948
SMa0277
Position (kb) 153
154
155 Strain fitness (log2 ratio) -1
0
1
2
3 at 152.762 kb on + strand at 152.763 kb on - strand at 152.824 kb on + strand at 152.824 kb on + strand at 152.825 kb on - strand at 152.825 kb on - strand at 153.104 kb on + strand, within SMa0271 at 153.232 kb on - strand, within SMa0271 at 153.233 kb on + strand, within SMa0271 at 153.234 kb on - strand, within SMa0271 at 153.234 kb on - strand, within SMa0271 at 153.244 kb on - strand, within SMa0271 at 153.322 kb on - strand, within SMa0271 at 153.333 kb on + strand, within SMa0271 at 153.334 kb on - strand, within SMa0271 at 153.334 kb on - strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.462 kb on + strand, within SMa0271 at 153.463 kb on - strand, within SMa0271 at 153.463 kb on - strand, within SMa0271 at 153.651 kb on + strand at 153.651 kb on + strand at 153.711 kb on - strand at 153.763 kb on + strand at 153.763 kb on + strand at 153.764 kb on - strand at 153.764 kb on - strand at 153.906 kb on - strand, within SMa0273 at 154.160 kb on + strand, within SMa0273 at 154.160 kb on + strand, within SMa0273 at 154.161 kb on - strand, within SMa0273 at 154.161 kb on - strand, within SMa0273 at 154.161 kb on - strand, within SMa0273 at 154.161 kb on - strand, within SMa0273 at 154.340 kb on + strand, within SMa0273 at 154.341 kb on - strand, within SMa0273 at 154.385 kb on + strand, within SMa0273 at 154.385 kb on + strand, within SMa0273 at 154.397 kb on + strand, within SMa0273 at 154.571 kb on + strand, within SMa0273 at 154.602 kb on - strand, within SMa0273 at 154.603 kb on + strand, within SMa0273 at 154.604 kb on - strand, within SMa0273 at 154.604 kb on - strand, within SMa0273 at 154.637 kb on - strand at 154.669 kb on + strand at 154.670 kb on - strand at 154.697 kb on + strand at 154.698 kb on - strand at 154.698 kb on - strand at 154.698 kb on - strand at 154.817 kb on - strand at 154.817 kb on - strand at 154.820 kb on + strand at 154.821 kb on - strand at 154.821 kb on - strand at 154.836 kb on - strand at 154.836 kb on - strand at 154.836 kb on - strand at 154.890 kb on - strand at 154.899 kb on - strand at 154.976 kb on - strand, within SMa0275 at 155.016 kb on - strand, within SMa0275 at 155.016 kb on - strand, within SMa0275 at 155.081 kb on + strand, within SMa0275 at 155.082 kb on - strand, within SMa0275 at 155.093 kb on + strand, within SMa0275 at 155.120 kb on + strand, within SMa0275 at 155.120 kb on + strand, within SMa0275 at 155.122 kb on + strand, within SMa0275 at 155.300 kb on + strand, within SMa0275 at 155.300 kb on + strand, within SMa0275 at 155.300 kb on + strand, within SMa0275 at 155.327 kb on + strand, within SMa0275 at 155.328 kb on - strand, within SMa0275 at 155.427 kb on - strand at 155.524 kb on - strand at 155.599 kb on + strand at 155.600 kb on - strand at 155.679 kb on - strand, within SMa0277 at 155.685 kb on - strand, within SMa0277
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 152,762 + +0.1 152,763 - +0.0 152,824 + +0.2 152,824 + +1.1 152,825 - +0.2 152,825 - +1.1 153,104 + SMa0271 0.38 +0.2 153,232 - SMa0271 0.50 +0.6 153,233 + SMa0271 0.51 -0.3 153,234 - SMa0271 0.51 +0.7 153,234 - SMa0271 0.51 -0.6 153,244 - SMa0271 0.52 +0.3 153,322 - SMa0271 0.59 +0.9 153,333 + SMa0271 0.61 -1.2 153,334 - SMa0271 0.61 +0.1 153,334 - SMa0271 0.61 +0.7 153,462 + SMa0271 0.73 +0.9 153,462 + SMa0271 0.73 +0.5 153,462 + SMa0271 0.73 +0.2 153,463 - SMa0271 0.74 -0.6 153,463 - SMa0271 0.74 +0.2 153,651 + -0.9 153,651 + +0.0 153,711 - +0.5 153,763 + -0.4 153,763 + +0.1 153,764 - -0.7 153,764 - -0.2 153,906 - SMa0273 0.16 +0.0 154,160 + SMa0273 0.42 +0.7 154,160 + SMa0273 0.42 +0.9 154,161 - SMa0273 0.42 -0.1 154,161 - SMa0273 0.42 +0.8 154,161 - SMa0273 0.42 +0.2 154,161 - SMa0273 0.42 -0.9 154,340 + SMa0273 0.61 +0.0 154,341 - SMa0273 0.61 +0.3 154,385 + SMa0273 0.65 +0.0 154,385 + SMa0273 0.65 +1.3 154,397 + SMa0273 0.66 +1.0 154,571 + SMa0273 0.84 +0.6 154,602 - SMa0273 0.88 -0.4 154,603 + SMa0273 0.88 -0.2 154,604 - SMa0273 0.88 +0.8 154,604 - SMa0273 0.88 +1.6 154,637 - +0.8 154,669 + -0.2 154,670 - +0.4 154,697 + +0.0 154,698 - +0.5 154,698 - +0.7 154,698 - -0.4 154,817 - -0.4 154,817 - -0.4 154,820 + +0.8 154,821 - +0.1 154,821 - +1.7 154,836 - -0.4 154,836 - +0.3 154,836 - -0.0 154,890 - +0.1 154,899 - +0.2 154,976 - SMa0275 0.23 +1.6 155,016 - SMa0275 0.30 +2.9 155,016 - SMa0275 0.30 +1.6 155,081 + SMa0275 0.41 -0.4 155,082 - SMa0275 0.41 -0.0 155,093 + SMa0275 0.43 -0.0 155,120 + SMa0275 0.47 -0.3 155,120 + SMa0275 0.47 -0.1 155,122 + SMa0275 0.48 -0.5 155,300 + SMa0275 0.78 +0.3 155,300 + SMa0275 0.78 +0.1 155,300 + SMa0275 0.78 -0.1 155,327 + SMa0275 0.83 -0.7 155,328 - SMa0275 0.83 +0.4 155,427 - -0.3 155,524 - -0.3 155,599 + -0.1 155,600 - +0.6 155,679 - SMa0277 0.23 +0.1 155,685 - SMa0277 0.25 -0.3
Or see this region's nucleotide sequence