Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21189 and SM_b21190 are separated by 1 nucleotides SM_b21190 and SM_b21191 are separated by 9 nucleotides
SM_b21189: SM_b21189 - glycosyltransferase, at 939,159 to 940,262
_b21189
SM_b21190: SM_b21190 - glycosyltransferase, at 940,264 to 941,301
_b21190
SM_b21191: SM_b21191 - surface saccharide ABC transporter ATP-binding/membrane spanning protein, at 941,311 to 943,104
_b21191
Position (kb) 940
941
942 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 939.372 kb on - strand, within SM_b21189 at 939.372 kb on - strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.373 kb on + strand, within SM_b21189 at 939.374 kb on - strand, within SM_b21189 at 939.571 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.637 kb on - strand, within SM_b21189 at 939.644 kb on + strand, within SM_b21189 at 939.704 kb on - strand at 939.786 kb on - strand, within SM_b21189 at 939.996 kb on + strand, within SM_b21189 at 939.996 kb on + strand, within SM_b21189 at 939.997 kb on - strand, within SM_b21189 at 939.997 kb on - strand, within SM_b21189 at 940.032 kb on + strand, within SM_b21189 at 940.032 kb on + strand, within SM_b21189 at 940.126 kb on - strand, within SM_b21189 at 940.301 kb on + strand at 940.301 kb on + strand at 940.301 kb on + strand at 940.302 kb on - strand at 940.302 kb on - strand at 940.302 kb on - strand at 940.590 kb on + strand, within SM_b21190 at 940.590 kb on + strand, within SM_b21190 at 940.591 kb on - strand, within SM_b21190 at 940.660 kb on + strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.661 kb on - strand, within SM_b21190 at 940.917 kb on + strand, within SM_b21190 at 940.917 kb on + strand, within SM_b21190 at 940.925 kb on - strand, within SM_b21190 at 940.963 kb on + strand, within SM_b21190 at 940.963 kb on + strand, within SM_b21190 at 941.039 kb on - strand, within SM_b21190 at 941.202 kb on + strand at 941.203 kb on - strand at 941.520 kb on - strand, within SM_b21191 at 941.636 kb on - strand, within SM_b21191 at 941.636 kb on - strand, within SM_b21191 at 941.685 kb on - strand, within SM_b21191 at 941.793 kb on + strand, within SM_b21191 at 942.217 kb on + strand, within SM_b21191 at 942.217 kb on + strand, within SM_b21191 at 942.234 kb on + strand, within SM_b21191
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 939,372 - SM_b21189 0.19 +0.1 939,372 - SM_b21189 0.19 -1.5 939,373 + SM_b21189 0.19 +0.4 939,373 + SM_b21189 0.19 -0.3 939,373 + SM_b21189 0.19 -2.0 939,374 - SM_b21189 0.19 +0.7 939,571 - SM_b21189 0.37 -0.1 939,637 - SM_b21189 0.43 +1.3 939,637 - SM_b21189 0.43 -0.9 939,637 - SM_b21189 0.43 -0.7 939,644 + SM_b21189 0.44 -0.2 939,704 - -0.5 939,786 - SM_b21189 0.57 +1.9 939,996 + SM_b21189 0.76 +0.4 939,996 + SM_b21189 0.76 +3.1 939,997 - SM_b21189 0.76 -1.0 939,997 - SM_b21189 0.76 -0.4 940,032 + SM_b21189 0.79 -0.6 940,032 + SM_b21189 0.79 +0.6 940,126 - SM_b21189 0.88 -0.7 940,301 + +0.1 940,301 + +0.4 940,301 + +0.1 940,302 - +0.1 940,302 - +0.3 940,302 - -0.1 940,590 + SM_b21190 0.31 -0.4 940,590 + SM_b21190 0.31 -0.1 940,591 - SM_b21190 0.32 -0.7 940,660 + SM_b21190 0.38 -0.0 940,661 - SM_b21190 0.38 -0.4 940,661 - SM_b21190 0.38 -0.0 940,661 - SM_b21190 0.38 +0.5 940,661 - SM_b21190 0.38 +0.0 940,917 + SM_b21190 0.63 +0.3 940,917 + SM_b21190 0.63 -0.3 940,925 - SM_b21190 0.64 -1.2 940,963 + SM_b21190 0.67 -1.3 940,963 + SM_b21190 0.67 -1.0 941,039 - SM_b21190 0.75 -0.3 941,202 + +0.0 941,203 - -0.0 941,520 - SM_b21191 0.12 +0.4 941,636 - SM_b21191 0.18 -2.3 941,636 - SM_b21191 0.18 +0.2 941,685 - SM_b21191 0.21 -0.7 941,793 + SM_b21191 0.27 +1.3 942,217 + SM_b21191 0.51 -0.0 942,217 + SM_b21191 0.51 -0.1 942,234 + SM_b21191 0.51 -1.7
Or see this region's nucleotide sequence