Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20325 and SM_b20326 are separated by 87 nucleotides SM_b20326 and SM_b20327 overlap by 1 nucleotides SM_b20327 and SM_b20328 are separated by 9 nucleotides
SM_b20325: SM_b20325 - ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) <small>(from data)</small>, at 328,098 to 329,369
_b20325
SM_b20326: SM_b20326 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 1 (ThuF) <small>(from data)</small>, at 329,457 to 330,443
_b20326
SM_b20327: SM_b20327 - ABC transporter for D-trehalose/D-maltose/sucrose, permease component 2 (ThuG) <small>(from data)</small>, at 330,443 to 331,273
_b20327
SM_b20328: SM_b20328 - ABC transporter for D-trehalose/D-maltose/sucrose, ATPase component (ThuK) <small>(from data)</small>, at 331,283 to 332,311
_b20328
Position (kb) 329
330
331 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 328.500 kb on + strand, within SM_b20325 at 328.500 kb on + strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.669 kb on - strand, within SM_b20325 at 328.833 kb on + strand, within SM_b20325 at 328.889 kb on + strand, within SM_b20325 at 328.890 kb on - strand, within SM_b20325 at 328.900 kb on - strand, within SM_b20325 at 328.905 kb on + strand, within SM_b20325 at 328.937 kb on - strand, within SM_b20325 at 329.032 kb on - strand, within SM_b20325 at 329.073 kb on + strand, within SM_b20325 at 329.446 kb on - strand at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.619 kb on + strand, within SM_b20326 at 329.686 kb on - strand, within SM_b20326 at 329.777 kb on + strand, within SM_b20326 at 329.777 kb on + strand, within SM_b20326 at 330.123 kb on + strand, within SM_b20326 at 330.123 kb on + strand, within SM_b20326 at 330.258 kb on + strand, within SM_b20326 at 330.259 kb on - strand, within SM_b20326 at 330.399 kb on + strand at 330.400 kb on - strand at 330.400 kb on - strand at 330.400 kb on - strand at 330.400 kb on - strand at 330.477 kb on - strand at 330.522 kb on - strand at 330.522 kb on - strand at 330.525 kb on - strand at 330.575 kb on + strand, within SM_b20327 at 330.590 kb on - strand, within SM_b20327 at 330.605 kb on + strand, within SM_b20327 at 330.605 kb on + strand, within SM_b20327 at 330.606 kb on - strand, within SM_b20327 at 330.606 kb on - strand, within SM_b20327 at 330.685 kb on - strand, within SM_b20327 at 330.714 kb on - strand, within SM_b20327 at 330.729 kb on + strand, within SM_b20327 at 330.729 kb on + strand, within SM_b20327 at 330.730 kb on - strand, within SM_b20327 at 330.869 kb on + strand, within SM_b20327 at 331.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 328,500 + SM_b20325 0.32 -2.9 328,500 + SM_b20325 0.32 -4.0 328,501 - SM_b20325 0.32 -2.0 328,501 - SM_b20325 0.32 -3.6 328,549 - SM_b20325 0.35 -2.6 328,549 - SM_b20325 0.35 -1.7 328,549 - SM_b20325 0.35 -2.9 328,669 - SM_b20325 0.45 -4.2 328,833 + SM_b20325 0.58 -2.2 328,889 + SM_b20325 0.62 -2.9 328,890 - SM_b20325 0.62 -2.0 328,900 - SM_b20325 0.63 -4.8 328,905 + SM_b20325 0.63 -2.9 328,937 - SM_b20325 0.66 -1.9 329,032 - SM_b20325 0.73 -1.2 329,073 + SM_b20325 0.77 -2.0 329,446 - -2.0 329,619 + SM_b20326 0.16 -3.2 329,619 + SM_b20326 0.16 -2.8 329,619 + SM_b20326 0.16 -4.1 329,619 + SM_b20326 0.16 -2.9 329,686 - SM_b20326 0.23 -3.0 329,777 + SM_b20326 0.32 -1.4 329,777 + SM_b20326 0.32 -4.0 330,123 + SM_b20326 0.67 -1.6 330,123 + SM_b20326 0.67 -1.0 330,258 + SM_b20326 0.81 -3.9 330,259 - SM_b20326 0.81 -4.6 330,399 + +0.3 330,400 - -2.9 330,400 - -1.9 330,400 - -3.8 330,400 - -0.4 330,477 - -3.0 330,522 - -3.1 330,522 - -2.9 330,525 - -2.9 330,575 + SM_b20327 0.16 +0.1 330,590 - SM_b20327 0.18 -2.2 330,605 + SM_b20327 0.19 -2.2 330,605 + SM_b20327 0.19 -1.9 330,606 - SM_b20327 0.20 -3.1 330,606 - SM_b20327 0.20 -2.5 330,685 - SM_b20327 0.29 -2.5 330,714 - SM_b20327 0.33 -2.8 330,729 + SM_b20327 0.34 -2.1 330,729 + SM_b20327 0.34 -2.1 330,730 - SM_b20327 0.35 -4.4 330,869 + SM_b20327 0.51 +1.6 331,272 - -2.7
Or see this region's nucleotide sequence