Experiment: methyl 3-keto-a-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20322 and SM_b20323 are separated by 87 nucleotides SM_b20323 and SM_b20324 are separated by 21 nucleotides SM_b20324 and SM_b20325 are separated by 478 nucleotides
SM_b20322: SM_b20322 - TRAP-type small permease component, at 325,229 to 325,834
_b20322
SM_b20323: SM_b20323 - transcriptional regulator, at 325,922 to 326,581
_b20323
SM_b20324: SM_b20324 - ThuR, regulatory protein for trehalosemaltose transport system, at 326,603 to 327,619
_b20324
SM_b20325: SM_b20325 - ABC transporter for D-trehalose/D-maltose/sucrose, substrate-binding component (ThuE) <small>(from data)</small>, at 328,098 to 329,369
_b20325
Position (kb) 326
327
328 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 325.651 kb on - strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.652 kb on + strand, within SM_b20322 at 325.911 kb on - strand at 326.409 kb on - strand, within SM_b20323 at 326.641 kb on + strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.642 kb on - strand at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.787 kb on + strand, within SM_b20324 at 326.807 kb on + strand, within SM_b20324 at 327.092 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.105 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.301 kb on - strand, within SM_b20324 at 327.323 kb on - strand, within SM_b20324 at 327.324 kb on - strand, within SM_b20324 at 327.570 kb on - strand at 327.646 kb on - strand at 327.756 kb on + strand at 327.756 kb on + strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.118 kb on - strand at 328.185 kb on - strand at 328.500 kb on + strand, within SM_b20325 at 328.500 kb on + strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.501 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325 at 328.549 kb on - strand, within SM_b20325
Per-strain Table
Position Strand Gene LocusTag Fraction methyl 3-keto-a-D-glucopyranoside (C) remove 325,651 - SM_b20322 0.70 -0.9 325,652 + SM_b20322 0.70 +1.3 325,652 + SM_b20322 0.70 +1.5 325,652 + SM_b20322 0.70 +0.3 325,911 - -0.1 326,409 - SM_b20323 0.74 -1.5 326,641 + +6.6 326,642 - +5.4 326,642 - +5.7 326,642 - +5.6 326,787 + SM_b20324 0.18 +5.8 326,787 + SM_b20324 0.18 +6.2 326,787 + SM_b20324 0.18 +5.5 326,807 + SM_b20324 0.20 +5.6 327,092 - SM_b20324 0.48 +5.2 327,105 - SM_b20324 0.49 +5.8 327,105 - SM_b20324 0.49 +5.9 327,105 - SM_b20324 0.49 +6.5 327,301 - SM_b20324 0.69 +6.2 327,301 - SM_b20324 0.69 +5.9 327,323 - SM_b20324 0.71 +6.0 327,324 - SM_b20324 0.71 +6.2 327,570 - +5.9 327,646 - -0.7 327,756 + +6.0 327,756 + +6.1 328,118 - -1.4 328,118 - -2.4 328,118 - -3.4 328,185 - -1.9 328,500 + SM_b20325 0.32 -2.9 328,500 + SM_b20325 0.32 -4.0 328,501 - SM_b20325 0.32 -2.0 328,501 - SM_b20325 0.32 -3.6 328,549 - SM_b20325 0.35 -2.6 328,549 - SM_b20325 0.35 -1.7 328,549 - SM_b20325 0.35 -2.9
Or see this region's nucleotide sequence