Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4409

Experiment: Choline Lysine 20 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline Lysine 20 mM
7,239	+		Psest_4406	0.82	-0.5
7,239	+		Psest_4406	0.82	+0.7
7,239	+		Psest_4406	0.82	+1.3
7,240	-		Psest_4406	0.83	+0.3
7,240	-		Psest_4406	0.83	-0.6
7,305	-				+0.7
7,445	+				-0.2
7,445	+				+2.3
7,445	+				-0.8
7,445	+				-1.5
7,445	+				-0.7
7,445	+				-0.4
7,445	+				+0.7
7,445	+				+1.0
7,445	+				+2.3
7,445	+				+1.7
7,445	+				-0.6
7,445	+				+3.3
7,445	+				+0.6
7,445	+				+2.0
7,445	+				-0.4
7,445	+				+0.3
7,445	+				-0.3
7,445	+				+0.5
7,445	+				+0.7
7,445	+				+2.6
7,445	+				-0.7
7,446	-				+1.4
7,446	-				-0.7
7,446	-				+2.3
7,446	-				-0.2
7,446	-				+1.7
7,446	-				+0.1
7,446	-				+0.5
7,446	-				+1.7
7,446	-				+1.0
7,446	-				+1.7
7,446	-				-0.2
7,446	-				+0.3
7,446	-				-0.0
7,446	-				-0.3
7,446	-				-1.5
7,446	-				+1.3
7,446	-				+4.3
7,446	-				-0.4
7,446	-				+1.7
7,446	-				+4.1
7,446	-				+0.7
7,446	-				+3.0
7,446	-				+3.6
7,446	-				+0.6
7,446	-				+1.7
7,446	-				+1.3
7,446	-				-0.3
7,446	-				-0.0
7,446	-				-0.4
7,446	-				+2.9
7,446	-				+1.0
7,446	-				-0.2
7,446	-				+0.7
7,446	-				+0.7
7,551	-				+2.1
7,551	-				-0.3
7,631	+				+1.5
7,631	+				+1.7
7,631	+				+4.0
7,632	-				-0.8
7,632	-				+0.3
7,632	-				-0.6
7,632	-				+1.8
7,632	-				+1.0
7,632	-				-0.8
7,632	-				-0.7
7,652	+				-0.3
7,652	+				+3.5
7,652	+				+1.3
7,652	+				+1.7
7,652	+				+1.1
7,653	-				-0.9
7,653	-				-0.5
7,653	-				+1.3
7,653	-				+1.3
7,653	-				+0.3
7,653	-				-0.5
7,653	-				+1.4
7,653	-				+0.3
7,653	-				+2.6
7,653	-				+0.3
7,653	-				+1.2
7,653	-				+2.3
7,664	+				+0.4
7,664	+				+1.3
7,664	+				-0.9
7,664	+				+1.3
7,664	+				+2.3
7,665	-				-1.8
7,665	-				+1.7
7,665	-				+1.0
7,665	-				+0.1
7,665	-				+0.7
7,665	-				+0.7
7,665	-				+1.3
7,665	-				+0.5
7,665	-				+4.2
7,665	-				+2.2
7,699	-				+0.3
7,705	+				+0.7
7,706	-				+2.9
7,825	+				-0.1
7,825	+				+1.1
7,825	+				+1.7
7,825	+				-0.7
7,825	+				+0.1
7,825	+				+0.7
7,825	+				-0.4
7,825	+				+0.5
7,825	+				-0.0
7,825	+				+1.1
7,825	+				+0.7
7,825	+				-1.3
7,825	+				+0.5
7,825	+				-0.3
7,825	+				+1.5
7,825	+				+0.1
7,825	+				-0.7
7,825	+				-0.0
7,825	+				+1.3
7,825	+				+1.0
7,825	+				-0.9
7,825	+				+1.9
7,825	+				-0.8
7,825	+				-0.7
7,825	+				+1.3
7,825	+				-1.3
7,825	+				+1.9
7,825	+				+0.9
7,826	-				+1.0
7,826	-				-0.4
7,826	-				+1.5
7,826	-				-0.2
7,826	-				+0.4
7,826	-				+0.7
7,826	-				+3.2
7,826	-				+0.7
7,826	-				-0.7
7,826	-				-1.8
7,826	-				+3.3
7,826	-				+1.7
7,826	-				+0.1
7,826	-				+1.7
7,826	-				+2.6
7,826	-				+2.3
7,826	-				+0.5
7,826	-				+1.0
7,826	-				-0.4
7,826	-				-0.0
7,826	-				-0.9
7,826	-				-0.4
7,826	-				-0.6
7,826	-				-0.8
7,826	-				-0.3
7,826	-				+0.8
7,846	+				+2.5
7,846	+				-1.4
7,846	+				-0.4
7,846	+				+0.4
7,846	+				+2.3
7,846	+				-0.3
7,846	+				-0.9
7,846	+				-0.2
7,846	+				-1.4
7,846	+				+0.1
7,847	-				-0.3
7,847	-				+2.2
7,847	-				+0.7
7,847	-				+1.0
7,847	-				-1.2
7,847	-				+2.4
7,847	-				+3.3
7,847	-				+1.1
8,138	+				-1.3
8,138	+				-1.4
8,139	-				+2.0
8,139	-				+0.1
8,139	-				+1.0
8,139	-				-0.3
8,149	+				+0.1
8,149	+				-1.7
8,149	+				-0.0
8,150	-				-1.5
8,150	-				+1.2
8,150	-				+1.3
8,150	-				+1.2
8,150	-				+1.9
8,150	-				+1.3
8,159	+				-0.3
8,159	+				+0.5
8,159	+				+0.1
8,160	-				-0.0
8,160	-				+1.0
8,173	+				+3.5
8,173	+				-0.4
8,173	+				+1.3
8,173	+				-0.1
8,173	+				-0.7
8,174	-				-0.0
8,174	-				-0.4
8,174	-				-0.2
8,174	-				-0.2
8,187	+				-0.3
8,187	+				-1.6
8,188	-				+0.7
8,188	-				-1.2
8,308	+		Psest_4409	0.27	+3.3
8,308	+		Psest_4409	0.27	-0.6
8,308	+		Psest_4409	0.27	+0.7
8,308	+		Psest_4409	0.27	+0.5
8,309	-		Psest_4409	0.27	+0.3
8,309	-		Psest_4409	0.27	+0.6
8,309	-		Psest_4409	0.27	+0.1
8,309	-		Psest_4409	0.27	+0.9
8,309	-		Psest_4409	0.27	+0.5
8,309	-		Psest_4409	0.27	+1.3
8,309	-		Psest_4409	0.27	+1.5
8,309	-		Psest_4409	0.27	-1.2
8,347	+		Psest_4409	0.33	+0.7
8,347	+		Psest_4409	0.33	+1.3
8,348	-		Psest_4409	0.33	+0.7
8,368	+		Psest_4409	0.36	+1.1
8,368	+		Psest_4409	0.36	+2.3
8,369	-		Psest_4409	0.36	+2.0
8,369	-		Psest_4409	0.36	+1.3
8,487	+		Psest_4409	0.55	-0.3
8,487	+		Psest_4409	0.55	+0.3
8,488	-		Psest_4409	0.56	+1.3
8,488	-		Psest_4409	0.56	-1.7
8,488	-		Psest_4409	0.56	-0.2
8,488	-		Psest_4409	0.56	-0.3
8,488	-		Psest_4409	0.56	+0.5
8,488	-		Psest_4409	0.56	+3.2
8,488	-		Psest_4409	0.56	+0.3
8,488	-		Psest_4409	0.56	-1.5
8,488	-		Psest_4409	0.56	-0.4
8,488	-		Psest_4409	0.56	+0.5
8,488	-		Psest_4409	0.56	+1.0
8,488	-		Psest_4409	0.56	+0.4
8,488	-		Psest_4409	0.56	+1.0
8,535	+		Psest_4409	0.63	-0.9
8,535	+		Psest_4409	0.63	+1.0
8,536	-		Psest_4409	0.63	-1.1
8,536	-		Psest_4409	0.63	+0.1
8,536	-		Psest_4409	0.63	-0.0
8,536	-		Psest_4409	0.63	+0.7
8,552	+		Psest_4409	0.66	-0.8
8,552	+		Psest_4409	0.66	-1.7
8,552	+		Psest_4409	0.66	-0.7
8,552	+		Psest_4409	0.66	+1.0
8,552	+		Psest_4409	0.66	-0.9
8,552	+		Psest_4409	0.66	+0.7
8,552	+		Psest_4409	0.66	-0.8
8,552	+		Psest_4409	0.66	+1.0
8,552	+		Psest_4409	0.66	-0.2
8,552	+		Psest_4409	0.66	+0.8
8,552	+		Psest_4409	0.66	+1.0
8,552	+		Psest_4409	0.66	+1.6
8,552	+		Psest_4409	0.66	+1.3
8,552	+		Psest_4409	0.66	+3.2
8,553	-		Psest_4409	0.66	-0.6
8,553	-		Psest_4409	0.66	+0.7
8,553	-		Psest_4409	0.66	-1.4
8,553	-		Psest_4409	0.66	+0.6
8,553	-		Psest_4409	0.66	+1.0
8,553	-		Psest_4409	0.66	+2.3
8,553	-		Psest_4409	0.66	-1.3
8,553	-		Psest_4409	0.66	+1.9
8,553	-		Psest_4409	0.66	+2.3
8,553	-		Psest_4409	0.66	+1.7
8,553	-		Psest_4409	0.66	+2.3
8,553	-		Psest_4409	0.66	+2.1
8,553	-		Psest_4409	0.66	-1.4
8,553	-		Psest_4409	0.66	+1.7
8,553	-		Psest_4409	0.66	+1.0
8,627	-		Psest_4409	0.78	+0.3
8,627	-		Psest_4409	0.78	+2.5
8,627	-		Psest_4409	0.78	+2.0
8,627	-		Psest_4409	0.78	+0.4
8,627	-		Psest_4409	0.78	+2.6
8,714	+				+0.3
8,714	+				+0.2
8,715	-				+0.7
8,715	-				-1.7
8,761	+				+0.3
8,761	+				-1.6
8,762	-				+1.2
8,762	-				+1.7
8,762	-				+0.1
8,820	+				+2.3
8,820	+				+2.3
8,820	+				+1.1
8,820	+				+2.3
8,820	+				+2.3
8,820	+				+4.9
8,820	+				-0.1
8,820	+				+0.7
8,820	+				+0.6
8,820	+				+1.5
8,820	+				+1.0
8,820	+				+0.1
8,820	+				+1.3
8,820	+				+1.3
8,820	+				+2.3
8,820	+				-0.0
8,820	+				-0.3
8,820	+				+0.5
8,820	+				-0.6
8,820	+				-1.2
8,820	+				+2.5
8,820	+				-0.4
8,820	+				+0.1
8,820	+				+0.3
8,820	+				+2.0
8,820	+				-0.9
8,820	+				-0.0
8,821	-				+0.3
8,821	-				-1.1
8,821	-				+0.5
8,821	-				+0.1
8,821	-				-2.0
8,821	-				+1.1
8,821	-				+4.4
8,821	-				+1.0
8,821	-				-1.3
8,821	-				+2.3
8,821	-				+2.0
8,821	-				-0.2
8,821	-				-0.9
8,924	-		Psest_4410	0.20	-0.0
8,950	+		Psest_4410	0.24	-0.9
8,950	+		Psest_4410	0.24	+2.9
8,950	+		Psest_4410	0.24	+0.5
8,951	-		Psest_4410	0.24	+0.7
8,951	-		Psest_4410	0.24	-0.4
8,951	-		Psest_4410	0.24	+0.5
9,037	+		Psest_4410	0.37	+1.7
9,037	+		Psest_4410	0.37	+0.3
9,037	+		Psest_4410	0.37	+1.0
9,037	+		Psest_4410	0.37	-0.7
9,038	-		Psest_4410	0.37	-0.9
9,038	-		Psest_4410	0.37	+1.1
9,038	-		Psest_4410	0.37	-0.5
9,038	-		Psest_4410	0.37	+0.7
9,174	+		Psest_4410	0.58	+1.0
9,174	+		Psest_4410	0.58	+0.5
9,174	+		Psest_4410	0.58	-0.1
9,174	+		Psest_4410	0.58	-0.4
9,174	+		Psest_4410	0.58	+3.3
9,174	+		Psest_4410	0.58	-2.1
9,174	+		Psest_4410	0.58	+2.3
9,174	+		Psest_4410	0.58	+1.3
9,174	+		Psest_4410	0.58	-1.8
9,174	+		Psest_4410	0.58	-0.2
9,175	-		Psest_4410	0.58	-1.0
9,175	-		Psest_4410	0.58	+0.1
9,175	-		Psest_4410	0.58	+0.1
9,175	-		Psest_4410	0.58	+0.3
9,175	-		Psest_4410	0.58	-1.9
9,175	-		Psest_4410	0.58	+1.0
9,175	-		Psest_4410	0.58	+1.7
9,175	-		Psest_4410	0.58	-0.5
9,175	-		Psest_4410	0.58	+3.3
9,175	-		Psest_4410	0.58	+1.7
9,175	-		Psest_4410	0.58	-1.1
9,175	-		Psest_4410	0.58	+0.3
9,175	-		Psest_4410	0.58	+0.7
9,175	-		Psest_4410	0.58	+3.0
9,175	-		Psest_4410	0.58	+1.3
9,237	+		Psest_4410	0.67	-1.9
9,237	+		Psest_4410	0.67	+4.4
9,237	+		Psest_4410	0.67	+0.3
9,237	+		Psest_4410	0.67	+1.8
9,237	+		Psest_4410	0.67	+1.7
9,237	+		Psest_4410	0.67	+2.9
9,237	+		Psest_4410	0.67	+2.3
9,237	+		Psest_4410	0.67	+0.7
9,237	+		Psest_4410	0.67	+1.5
9,237	+		Psest_4410	0.67	+0.1
9,237	+		Psest_4410	0.67	-1.8
9,238	-		Psest_4410	0.67	+1.7
9,238	-		Psest_4410	0.67	-1.6
9,238	-		Psest_4410	0.67	+1.5
9,238	-		Psest_4410	0.67	+1.7
9,238	-		Psest_4410	0.67	-0.6
9,238	-		Psest_4410	0.67	+1.6
9,238	-		Psest_4410	0.67	+0.3
9,238	-		Psest_4410	0.67	-0.3
9,238	-		Psest_4410	0.67	+2.0
9,238	-		Psest_4410	0.67	+2.1
9,238	-		Psest_4410	0.67	+1.7
9,238	-		Psest_4410	0.67	-0.5
9,238	-		Psest_4410	0.67	-0.9
9,254	-		Psest_4410	0.70	+1.0
9,270	+		Psest_4410	0.72	-1.8
9,270	+		Psest_4410	0.72	+1.7
9,270	+		Psest_4410	0.72	+2.0
9,270	+		Psest_4410	0.72	-0.2
9,270	+		Psest_4410	0.72	+0.3
9,270	+		Psest_4410	0.72	-0.3
9,271	-		Psest_4410	0.72	+0.3
9,271	-		Psest_4410	0.72	+3.3
9,271	-		Psest_4410	0.72	+2.3
9,271	-		Psest_4410	0.72	+2.4
9,271	-		Psest_4410	0.72	+0.7
9,271	-		Psest_4410	0.72	-1.0
9,271	-		Psest_4410	0.72	-1.1
9,271	-		Psest_4410	0.72	+2.3
9,271	-		Psest_4410	0.72	+0.1
9,271	-		Psest_4410	0.72	+0.3
9,271	-		Psest_4410	0.72	-0.5
9,338	+		Psest_4410	0.82	+0.5
9,369	+		Psest_4410	0.87	-2.0
9,369	+		Psest_4410	0.87	+2.3
9,369	+		Psest_4410	0.87	-0.3
9,369	+		Psest_4410	0.87	+1.1
9,369	+		Psest_4410	0.87	-1.7
9,369	+		Psest_4410	0.87	-1.3
9,369	+		Psest_4410	0.87	-0.0
9,369	+		Psest_4410	0.87	-1.0
9,370	-		Psest_4410	0.87	-0.3
9,409	+				-0.7
9,409	+				+0.5
9,410	-				-1.1
9,410	-				+0.7
9,410	-				-0.3
9,487	+				+1.3
9,487	+				+0.5
9,487	+				-0.0
9,487	+				-0.6
9,487	+				-0.6
9,487	+				-0.3
9,487	+				+1.7
9,487	+				-0.0
9,487	+				+1.1
9,487	+				+1.3
9,487	+				-0.0
9,487	+				+2.5
9,488	-				-0.8
9,488	-				-0.7
9,488	-				-0.0
9,488	-				+2.2
9,488	-				-1.0
9,488	-				-0.2
9,488	-				-0.8
9,488	-				+0.3
9,488	-				+0.1
9,488	-				+4.0
9,488	-				+1.3
9,488	-				+0.8
9,488	-				+1.7
9,488	-				-0.0
9,517	+		Psest_4411	0.16	+1.2
9,518	-		Psest_4411	0.16	+3.2
9,529	+		Psest_4411	0.19	+0.3
9,529	+		Psest_4411	0.19	+0.5
9,529	+		Psest_4411	0.19	+0.3
9,529	+		Psest_4411	0.19	-0.3
9,529	+		Psest_4411	0.19	+0.7
9,530	-		Psest_4411	0.19	+3.9
9,530	-		Psest_4411	0.19	+0.7
9,530	-		Psest_4411	0.19	-0.0
9,530	-		Psest_4411	0.19	+0.8
9,530	-		Psest_4411	0.19	+0.7
9,530	-		Psest_4411	0.19	+1.0
9,530	-		Psest_4411	0.19	+2.6
9,530	-		Psest_4411	0.19	+0.9
9,530	-		Psest_4411	0.19	-0.3
9,530	-		Psest_4411	0.19	-0.4
9,574	+		Psest_4411	0.30	+1.0
9,574	+		Psest_4411	0.30	+2.7
9,574	+		Psest_4411	0.30	-0.5
9,574	+		Psest_4411	0.30	+1.0
9,574	+		Psest_4411	0.30	-0.9
9,574	+		Psest_4411	0.30	+1.0
9,574	+		Psest_4411	0.30	-1.1
9,575	-		Psest_4411	0.30	-0.4
9,575	-		Psest_4411	0.30	-0.2
9,575	-		Psest_4411	0.30	-2.9
9,575	-		Psest_4411	0.30	-1.9
9,656	+		Psest_4411	0.50	+0.3
9,657	-		Psest_4411	0.50	+3.0
9,657	-		Psest_4411	0.50	+1.0
9,657	-		Psest_4411	0.50	-0.9