Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3666

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3665 and Psest_3666 overlap by 26 nucleotidesPsest_3666 and Psest_3667 are separated by 110 nucleotides Psest_3665: Psest_3665 - Organic solvent tolerance protein OstA, at 3,827,319 to 3,830,111 _3665 Psest_3666: Psest_3666 - Parvulin-like peptidyl-prolyl isomerase, at 3,830,086 to 3,831,399 _3666 Psest_3667: Psest_3667 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 3,831,510 to 3,832,502 _3667 Position (kb) 3830 3831 3832Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3830.035 kb on + strandat 3831.397 kb on + strandat 3831.398 kb on - strandat 3831.398 kb on - strandat 3831.408 kb on + strandat 3831.408 kb on + strandat 3831.408 kb on + strandat 3831.408 kb on + strandat 3831.409 kb on - strandat 3831.409 kb on - strandat 3831.409 kb on - strandat 3831.417 kb on + strandat 3831.417 kb on + strandat 3831.417 kb on + strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.418 kb on - strandat 3831.422 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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3,830,035 + +1.8
3,831,397 + +0.4
3,831,398 - -1.4
3,831,398 - -1.3
3,831,408 + +0.1
3,831,408 + +0.4
3,831,408 + +1.8
3,831,408 + -0.5
3,831,409 - -1.7
3,831,409 - -2.9
3,831,409 - -0.7
3,831,417 + +1.3
3,831,417 + +1.2
3,831,417 + +0.1
3,831,418 - -0.1
3,831,418 - -1.5
3,831,418 - -0.4
3,831,418 - -0.3
3,831,418 - -0.0
3,831,418 - -2.0
3,831,418 - -3.0
3,831,418 - -1.2
3,831,418 - -2.2
3,831,418 - -1.1
3,831,418 - -0.3
3,831,422 + -1.0

Or see this region's nucleotide sequence