Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1604

Experiment: Choline Lysine 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1603 and Psest_1604 overlap by 1 nucleotidesPsest_1604 and Psest_1605 overlap by 4 nucleotidesPsest_1605 and Psest_1606 are separated by 81 nucleotides Psest_1603: Psest_1603 - Thiol:disulfide interchange protein, at 1,706,639 to 1,708,375 _1603 Psest_1604: Psest_1604 - Thiol-disulfide isomerase and thioredoxins, at 1,708,375 to 1,709,190 _1604 Psest_1605: Psest_1605 - Protein-disulfide isomerase, at 1,709,187 to 1,709,954 _1605 Psest_1606: Psest_1606 - hypothetical protein, at 1,710,036 to 1,710,707 _1606 Position (kb) 1708 1709 1710Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1707.971 kb on + strand, within Psest_1603at 1707.972 kb on - strand, within Psest_1603at 1708.094 kb on + strand, within Psest_1603at 1708.097 kb on + strand, within Psest_1603at 1708.097 kb on + strand, within Psest_1603at 1708.098 kb on - strand, within Psest_1603at 1708.120 kb on + strand, within Psest_1603at 1708.121 kb on - strand, within Psest_1603at 1708.249 kb on - strandat 1708.561 kb on + strand, within Psest_1604at 1708.562 kb on - strand, within Psest_1604at 1708.570 kb on + strand, within Psest_1604at 1708.570 kb on + strand, within Psest_1604at 1708.834 kb on + strand, within Psest_1604at 1709.089 kb on + strand, within Psest_1604at 1709.089 kb on + strand, within Psest_1604at 1709.089 kb on + strand, within Psest_1604at 1709.089 kb on + strand, within Psest_1604at 1709.211 kb on + strandat 1709.358 kb on + strand, within Psest_1605at 1709.382 kb on + strand, within Psest_1605at 1709.382 kb on + strand, within Psest_1605at 1709.383 kb on - strand, within Psest_1605at 1709.383 kb on - strand, within Psest_1605at 1709.383 kb on - strand, within Psest_1605at 1709.383 kb on - strand, within Psest_1605at 1709.383 kb on - strand, within Psest_1605at 1709.476 kb on - strand, within Psest_1605at 1709.476 kb on - strand, within Psest_1605at 1709.562 kb on + strand, within Psest_1605at 1709.562 kb on + strand, within Psest_1605at 1709.562 kb on + strand, within Psest_1605at 1709.562 kb on + strand, within Psest_1605at 1709.562 kb on + strand, within Psest_1605at 1709.562 kb on + strand, within Psest_1605at 1709.563 kb on - strand, within Psest_1605at 1709.563 kb on - strand, within Psest_1605at 1709.563 kb on - strand, within Psest_1605at 1709.563 kb on - strand, within Psest_1605at 1709.872 kb on - strand, within Psest_1605at 1710.030 kb on + strandat 1710.157 kb on + strand, within Psest_1606at 1710.157 kb on + strand, within Psest_1606at 1710.157 kb on + strand, within Psest_1606at 1710.157 kb on + strand, within Psest_1606at 1710.158 kb on - strand, within Psest_1606at 1710.171 kb on - strand, within Psest_1606at 1710.171 kb on - strand, within Psest_1606at 1710.175 kb on + strand, within Psest_1606at 1710.176 kb on - strand, within Psest_1606

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline Lysine 20 mM
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1,707,971 + Psest_1603 0.77 -0.8
1,707,972 - Psest_1603 0.77 +0.6
1,708,094 + Psest_1603 0.84 +0.5
1,708,097 + Psest_1603 0.84 -1.4
1,708,097 + Psest_1603 0.84 -0.4
1,708,098 - Psest_1603 0.84 +2.2
1,708,120 + Psest_1603 0.85 -1.5
1,708,121 - Psest_1603 0.85 -0.1
1,708,249 - +1.1
1,708,561 + Psest_1604 0.23 -1.8
1,708,562 - Psest_1604 0.23 -0.8
1,708,570 + Psest_1604 0.24 -0.6
1,708,570 + Psest_1604 0.24 -0.6
1,708,834 + Psest_1604 0.56 -2.1
1,709,089 + Psest_1604 0.88 -2.2
1,709,089 + Psest_1604 0.88 +0.4
1,709,089 + Psest_1604 0.88 -0.2
1,709,089 + Psest_1604 0.88 +0.5
1,709,211 + -0.8
1,709,358 + Psest_1605 0.22 +1.2
1,709,382 + Psest_1605 0.25 +0.4
1,709,382 + Psest_1605 0.25 +0.7
1,709,383 - Psest_1605 0.26 +0.5
1,709,383 - Psest_1605 0.26 +3.4
1,709,383 - Psest_1605 0.26 -0.9
1,709,383 - Psest_1605 0.26 +1.0
1,709,383 - Psest_1605 0.26 +0.7
1,709,476 - Psest_1605 0.38 +0.0
1,709,476 - Psest_1605 0.38 +0.4
1,709,562 + Psest_1605 0.49 -0.1
1,709,562 + Psest_1605 0.49 -0.7
1,709,562 + Psest_1605 0.49 +1.4
1,709,562 + Psest_1605 0.49 +0.2
1,709,562 + Psest_1605 0.49 +0.7
1,709,562 + Psest_1605 0.49 +1.4
1,709,563 - Psest_1605 0.49 +0.7
1,709,563 - Psest_1605 0.49 +0.8
1,709,563 - Psest_1605 0.49 -0.1
1,709,563 - Psest_1605 0.49 +0.9
1,709,872 - Psest_1605 0.89 -1.4
1,710,030 + -1.7
1,710,157 + Psest_1606 0.18 -1.9
1,710,157 + Psest_1606 0.18 -0.3
1,710,157 + Psest_1606 0.18 -2.1
1,710,157 + Psest_1606 0.18 -2.5
1,710,158 - Psest_1606 0.18 -1.2
1,710,171 - Psest_1606 0.20 -0.6
1,710,171 - Psest_1606 0.20 -0.3
1,710,175 + Psest_1606 0.21 +2.8
1,710,176 - Psest_1606 0.21 +2.6

Or see this region's nucleotide sequence