Experiment: Choline Lysine 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1394 and Psest_1395 are separated by 10 nucleotides Psest_1395 and Psest_1396 are separated by 122 nucleotides Psest_1396 and Psest_1397 are separated by 36 nucleotides Psest_1397 and Psest_1398 overlap by 56 nucleotides
Psest_1394: Psest_1394 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 1,503,364 to 1,503,804
_1394
Psest_1395: Psest_1395 - Short-chain alcohol dehydrogenase of unknown specificity, at 1,503,815 to 1,504,552
_1395
Psest_1396: Psest_1396 - Cytosine/adenosine deaminases, at 1,504,675 to 1,505,145
_1396
Psest_1397: Psest_1397 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 1,505,182 to 1,506,018
_1397
Psest_1398: Psest_1398 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 1,505,963 to 1,506,766
_1398
Position (kb) 1504
1505
1506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1503.820 kb on - strand at 1503.885 kb on + strand at 1503.885 kb on + strand at 1503.886 kb on - strand at 1504.075 kb on - strand, within Psest_1395 at 1504.090 kb on - strand, within Psest_1395 at 1504.116 kb on + strand, within Psest_1395 at 1504.454 kb on + strand, within Psest_1395 at 1504.454 kb on + strand, within Psest_1395 at 1504.455 kb on - strand, within Psest_1395 at 1504.527 kb on - strand at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.910 kb on + strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1504.911 kb on - strand, within Psest_1396 at 1505.009 kb on + strand, within Psest_1396 at 1505.009 kb on + strand, within Psest_1396 at 1505.010 kb on - strand, within Psest_1396 at 1505.010 kb on - strand, within Psest_1396 at 1505.010 kb on - strand, within Psest_1396 at 1505.010 kb on - strand, within Psest_1396 at 1505.010 kb on - strand, within Psest_1396 at 1505.010 kb on - strand, within Psest_1396 at 1505.010 kb on - strand, within Psest_1396 at 1505.010 kb on - strand, within Psest_1396 at 1505.166 kb on + strand at 1505.166 kb on + strand at 1505.436 kb on - strand, within Psest_1397 at 1505.456 kb on + strand, within Psest_1397 at 1505.778 kb on + strand, within Psest_1397 at 1505.778 kb on + strand, within Psest_1397 at 1505.779 kb on - strand, within Psest_1397 at 1505.779 kb on - strand, within Psest_1397
Per-strain Table
Position Strand Gene LocusTag Fraction Choline Lysine 20 mM remove 1,503,820 - +1.9 1,503,885 + +0.7 1,503,885 + +0.1 1,503,886 - +2.1 1,504,075 - Psest_1395 0.35 +0.4 1,504,090 - Psest_1395 0.37 +0.2 1,504,116 + Psest_1395 0.41 +0.5 1,504,454 + Psest_1395 0.87 +1.7 1,504,454 + Psest_1395 0.87 +0.6 1,504,455 - Psest_1395 0.87 +1.2 1,504,527 - +0.3 1,504,910 + Psest_1396 0.50 +0.3 1,504,910 + Psest_1396 0.50 +0.5 1,504,910 + Psest_1396 0.50 +0.8 1,504,910 + Psest_1396 0.50 -1.7 1,504,910 + Psest_1396 0.50 -1.6 1,504,910 + Psest_1396 0.50 -3.1 1,504,910 + Psest_1396 0.50 -1.9 1,504,910 + Psest_1396 0.50 +0.3 1,504,910 + Psest_1396 0.50 -0.8 1,504,910 + Psest_1396 0.50 -0.2 1,504,910 + Psest_1396 0.50 +2.2 1,504,910 + Psest_1396 0.50 -1.3 1,504,911 - Psest_1396 0.50 -0.8 1,504,911 - Psest_1396 0.50 +2.6 1,504,911 - Psest_1396 0.50 +0.5 1,504,911 - Psest_1396 0.50 +0.4 1,504,911 - Psest_1396 0.50 +0.3 1,504,911 - Psest_1396 0.50 +1.9 1,504,911 - Psest_1396 0.50 +0.9 1,504,911 - Psest_1396 0.50 -0.7 1,504,911 - Psest_1396 0.50 -0.7 1,504,911 - Psest_1396 0.50 -0.8 1,504,911 - Psest_1396 0.50 -1.3 1,505,009 + Psest_1396 0.71 +0.9 1,505,009 + Psest_1396 0.71 +0.4 1,505,010 - Psest_1396 0.71 +0.7 1,505,010 - Psest_1396 0.71 +0.2 1,505,010 - Psest_1396 0.71 +1.0 1,505,010 - Psest_1396 0.71 +1.1 1,505,010 - Psest_1396 0.71 -0.4 1,505,010 - Psest_1396 0.71 -1.5 1,505,010 - Psest_1396 0.71 +2.5 1,505,010 - Psest_1396 0.71 -0.4 1,505,166 + -0.8 1,505,166 + +1.1 1,505,436 - Psest_1397 0.30 -0.8 1,505,456 + Psest_1397 0.33 -0.4 1,505,778 + Psest_1397 0.71 -2.0 1,505,778 + Psest_1397 0.71 -1.7 1,505,779 - Psest_1397 0.71 -0.8 1,505,779 - Psest_1397 0.71 -0.7
Or see this region's nucleotide sequence