Experiment: methyl-beta-D-xylopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01852 and SMc01851 are separated by 137 nucleotides SMc01851 and SMc01850 are separated by 132 nucleotides
SMc01852: SMc01852 - pyrophosphate--fructose-6-phosphate 1-phosphotransferase, at 2,361,151 to 2,362,365
SMc01852
SMc01851: SMc01851 - amino acid efflux protein, at 2,362,503 to 2,363,138
SMc01851
SMc01850: SMc01850 - hypothetical protein, at 2,363,271 to 2,364,272
SMc01850
Position (kb)
2362
2363
2364 Strain fitness (log2 ratio)
-1
0
1 at 2361.551 kb on - strand, within SMc01852 at 2361.778 kb on + strand, within SMc01852 at 2361.779 kb on - strand, within SMc01852 at 2361.780 kb on + strand, within SMc01852 at 2361.780 kb on + strand, within SMc01852 at 2361.805 kb on + strand, within SMc01852 at 2361.806 kb on - strand, within SMc01852 at 2361.856 kb on + strand, within SMc01852 at 2361.856 kb on + strand, within SMc01852 at 2361.857 kb on - strand, within SMc01852 at 2361.857 kb on - strand, within SMc01852 at 2361.857 kb on - strand, within SMc01852 at 2362.123 kb on + strand, within SMc01852 at 2362.123 kb on + strand, within SMc01852 at 2362.123 kb on + strand, within SMc01852 at 2362.123 kb on + strand, within SMc01852 at 2362.124 kb on - strand, within SMc01852 at 2362.124 kb on - strand, within SMc01852 at 2362.124 kb on - strand, within SMc01852 at 2362.124 kb on - strand, within SMc01852 at 2362.124 kb on - strand, within SMc01852 at 2362.124 kb on - strand, within SMc01852 at 2362.590 kb on + strand, within SMc01851 at 2362.747 kb on - strand, within SMc01851 at 2362.857 kb on + strand, within SMc01851 at 2362.857 kb on + strand, within SMc01851 at 2362.858 kb on - strand, within SMc01851 at 2362.858 kb on - strand, within SMc01851 at 2362.858 kb on - strand, within SMc01851 at 2362.858 kb on - strand, within SMc01851 at 2362.875 kb on - strand, within SMc01851 at 2363.004 kb on + strand, within SMc01851 at 2363.004 kb on + strand, within SMc01851 at 2363.005 kb on - strand, within SMc01851 at 2363.051 kb on + strand, within SMc01851 at 2363.052 kb on - strand, within SMc01851 at 2363.367 kb on - strand at 2363.440 kb on - strand, within SMc01850 at 2363.672 kb on + strand, within SMc01850 at 2363.952 kb on + strand, within SMc01850 at 2363.953 kb on - strand, within SMc01850 at 2364.066 kb on + strand, within SMc01850 at 2364.091 kb on - strand, within SMc01850 at 2364.091 kb on - strand, within SMc01850
Per-strain Table
Position Strand Gene LocusTag Fraction methyl-beta-D-xylopyranoside (C) remove 2,361,551 - SMc01852 0.33 -0.8 2,361,778 + SMc01852 0.52 -0.5 2,361,779 - SMc01852 0.52 -0.5 2,361,780 + SMc01852 0.52 -0.6 2,361,780 + SMc01852 0.52 -1.0 2,361,805 + SMc01852 0.54 -1.0 2,361,806 - SMc01852 0.54 -0.6 2,361,856 + SMc01852 0.58 +0.1 2,361,856 + SMc01852 0.58 +0.0 2,361,857 - SMc01852 0.58 -0.4 2,361,857 - SMc01852 0.58 -1.0 2,361,857 - SMc01852 0.58 -0.8 2,362,123 + SMc01852 0.80 -0.5 2,362,123 + SMc01852 0.80 -0.4 2,362,123 + SMc01852 0.80 -0.2 2,362,123 + SMc01852 0.80 -0.7 2,362,124 - SMc01852 0.80 +0.1 2,362,124 - SMc01852 0.80 -0.7 2,362,124 - SMc01852 0.80 -0.6 2,362,124 - SMc01852 0.80 -0.8 2,362,124 - SMc01852 0.80 -0.5 2,362,124 - SMc01852 0.80 +0.5 2,362,590 + SMc01851 0.14 -0.8 2,362,747 - SMc01851 0.38 -0.3 2,362,857 + SMc01851 0.56 +0.1 2,362,857 + SMc01851 0.56 +0.0 2,362,858 - SMc01851 0.56 -0.7 2,362,858 - SMc01851 0.56 -0.1 2,362,858 - SMc01851 0.56 -0.1 2,362,858 - SMc01851 0.56 +0.5 2,362,875 - SMc01851 0.58 +0.1 2,363,004 + SMc01851 0.79 -0.2 2,363,004 + SMc01851 0.79 -0.0 2,363,005 - SMc01851 0.79 -0.2 2,363,051 + SMc01851 0.86 -1.2 2,363,052 - SMc01851 0.86 -0.4 2,363,367 - +0.2 2,363,440 - SMc01850 0.17 +0.3 2,363,672 + SMc01850 0.40 -0.7 2,363,952 + SMc01850 0.68 -0.0 2,363,953 - SMc01850 0.68 -1.3 2,364,066 + SMc01850 0.79 -0.0 2,364,091 - SMc01850 0.82 -1.3 2,364,091 - SMc01850 0.82 -0.3
Or see this region's nucleotide sequence