Experiment: methyl-beta-D-xylopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1629 and SMa5038 overlap by 246 nucleotides SMa5038 and SMa1630 overlap by 52 nucleotides SMa1630 and SMa1632 are separated by 48 nucleotides
SMa1629: SMa1629 - short chain dehydrogenase, at 906,813 to 907,592
SMa1629
SMa5038: SMa5038 - hypothetical protein, at 907,347 to 907,643
SMa5038
SMa1630: SMa1630 - hypothetical protein, at 907,592 to 907,912
SMa1630
SMa1632: SMa1632 - LysR family transcriptional regulator, at 907,961 to 908,914
SMa1632
Position (kb) 907
908
909 Strain fitness (log2 ratio) -1
0
1
2 at 907.110 kb on - strand, within SMa1629 at 907.110 kb on - strand, within SMa1629 at 907.111 kb on + strand, within SMa1629 at 907.141 kb on + strand, within SMa1629 at 907.142 kb on - strand, within SMa1629 at 907.642 kb on - strand at 907.642 kb on - strand at 907.740 kb on + strand, within SMa1630 at 907.741 kb on - strand, within SMa1630 at 907.884 kb on + strand at 907.884 kb on + strand at 907.885 kb on - strand at 907.885 kb on - strand at 907.885 kb on - strand at 907.967 kb on - strand at 908.124 kb on + strand, within SMa1632 at 908.124 kb on + strand, within SMa1632 at 908.125 kb on - strand, within SMa1632 at 908.125 kb on - strand, within SMa1632 at 908.125 kb on - strand, within SMa1632 at 908.413 kb on + strand, within SMa1632 at 908.528 kb on + strand, within SMa1632 at 908.732 kb on + strand, within SMa1632 at 908.733 kb on - strand, within SMa1632 at 908.829 kb on - strand at 908.832 kb on - strand at 908.850 kb on + strand at 908.936 kb on + strand at 908.982 kb on - strand at 908.982 kb on - strand at 909.080 kb on + strand at 909.080 kb on + strand at 909.081 kb on - strand at 909.081 kb on - strand at 909.212 kb on + strand at 909.411 kb on + strand at 909.411 kb on + strand at 909.412 kb on - strand at 909.412 kb on - strand at 909.413 kb on + strand at 909.413 kb on + strand at 909.413 kb on + strand at 909.414 kb on - strand at 909.414 kb on - strand at 909.419 kb on - strand at 909.535 kb on + strand at 909.597 kb on + strand at 909.612 kb on + strand at 909.613 kb on - strand at 909.733 kb on + strand at 909.734 kb on - strand at 909.735 kb on + strand at 909.735 kb on + strand at 909.735 kb on + strand at 909.736 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methyl-beta-D-xylopyranoside (C) remove 907,110 - SMa1629 0.38 -0.0 907,110 - SMa1629 0.38 -0.3 907,111 + SMa1629 0.38 -0.6 907,141 + SMa1629 0.42 -0.4 907,142 - SMa1629 0.42 -0.0 907,642 - -0.2 907,642 - -0.8 907,740 + SMa1630 0.46 -0.8 907,741 - SMa1630 0.46 +0.4 907,884 + -0.1 907,884 + -0.3 907,885 - +0.4 907,885 - -0.2 907,885 - -0.2 907,967 - -0.2 908,124 + SMa1632 0.17 -0.3 908,124 + SMa1632 0.17 +0.3 908,125 - SMa1632 0.17 +0.8 908,125 - SMa1632 0.17 +0.7 908,125 - SMa1632 0.17 +0.1 908,413 + SMa1632 0.47 +0.2 908,528 + SMa1632 0.59 +0.5 908,732 + SMa1632 0.81 +0.0 908,733 - SMa1632 0.81 +0.7 908,829 - -0.2 908,832 - +0.1 908,850 + -0.7 908,936 + -0.0 908,982 - -0.2 908,982 - +1.8 909,080 + -0.4 909,080 + -0.3 909,081 - -0.9 909,081 - -0.6 909,212 + +0.7 909,411 + -0.2 909,411 + +0.6 909,412 - -0.3 909,412 - -0.4 909,413 + +0.4 909,413 + +1.1 909,413 + +0.3 909,414 - -0.3 909,414 - +0.4 909,419 - -0.1 909,535 + +0.2 909,597 + +0.0 909,612 + -0.9 909,613 - -0.9 909,733 + +0.1 909,734 - -0.2 909,735 + -0.1 909,735 + +0.7 909,735 + -0.4 909,736 - +0.2
Or see this region's nucleotide sequence