Experiment: methyl-beta-D-xylopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20028 and SM_b20029 are separated by 439 nucleotides SM_b20029 and SM_b20030 overlap by 1 nucleotides SM_b20030 and SM_b20031 are separated by 25 nucleotides SM_b20031 and SM_b20032 are separated by 96 nucleotides
SM_b20028: SM_b20028 - hypothetical protein, at 39,374 to 40,510
_b20028
SM_b20029: SM_b20029 - hypothetical protein, at 40,950 to 41,423
_b20029
SM_b20030: SM_b20030 - RNA polymerase sigma factor SigJ, at 41,423 to 42,280
_b20030
SM_b20031: SM_b20031 - hypothetical protein, at 42,306 to 42,554
_b20031
SM_b20032: SM_b20032 - hypothetical protein, at 42,651 to 43,385
_b20032
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2 at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.510 kb on + strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.511 kb on - strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.512 kb on + strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.513 kb on - strand at 40.514 kb on + strand at 40.515 kb on - strand at 40.515 kb on - strand at 40.528 kb on + strand at 40.547 kb on + strand at 40.547 kb on + strand at 40.548 kb on - strand at 40.548 kb on - strand at 40.565 kb on + strand at 40.565 kb on + strand at 40.566 kb on - strand at 40.597 kb on + strand at 40.598 kb on - strand at 40.598 kb on - strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.801 kb on + strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 40.802 kb on - strand at 41.048 kb on + strand, within SM_b20029 at 41.154 kb on + strand, within SM_b20029 at 41.154 kb on + strand, within SM_b20029 at 41.155 kb on - strand, within SM_b20029 at 41.155 kb on - strand, within SM_b20029 at 41.188 kb on - strand, within SM_b20029 at 41.268 kb on + strand, within SM_b20029 at 41.330 kb on + strand, within SM_b20029 at 41.531 kb on - strand, within SM_b20030 at 41.614 kb on - strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.666 kb on + strand, within SM_b20030 at 41.667 kb on - strand, within SM_b20030 at 41.667 kb on - strand, within SM_b20030 at 42.239 kb on + strand at 42.239 kb on + strand at 42.307 kb on + strand at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.372 kb on - strand, within SM_b20031 at 42.500 kb on - strand, within SM_b20031 at 42.500 kb on - strand, within SM_b20031 at 42.583 kb on + strand at 42.583 kb on + strand at 42.584 kb on - strand at 42.776 kb on - strand, within SM_b20032 at 42.825 kb on + strand, within SM_b20032 at 42.825 kb on + strand, within SM_b20032 at 42.826 kb on - strand, within SM_b20032 at 43.053 kb on - strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.275 kb on + strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032 at 43.276 kb on - strand, within SM_b20032
Per-strain Table
Position Strand Gene LocusTag Fraction methyl-beta-D-xylopyranoside (C) remove 40,510 + +1.6 40,510 + +0.3 40,510 + -1.9 40,510 + +0.1 40,511 - -0.4 40,511 - -0.1 40,511 - +0.4 40,511 - -0.7 40,511 - -0.4 40,512 + -0.2 40,512 + -0.1 40,512 + -0.4 40,512 + -0.7 40,512 + +0.1 40,512 + -0.3 40,512 + -0.5 40,513 - -0.3 40,513 - -0.1 40,513 - +0.1 40,513 - -0.8 40,513 - -0.7 40,513 - +0.4 40,514 + -0.7 40,515 - +0.2 40,515 - -0.2 40,528 + -0.9 40,547 + -0.2 40,547 + +0.3 40,548 - +0.6 40,548 - -1.1 40,565 + +0.1 40,565 + +0.1 40,566 - +0.6 40,597 + +0.9 40,598 - -0.3 40,598 - -0.4 40,801 + +0.8 40,801 + +0.4 40,801 + -0.2 40,801 + +0.2 40,801 + +0.2 40,802 - +0.6 40,802 - +0.4 40,802 - -1.4 40,802 - +1.2 40,802 - -0.9 41,048 + SM_b20029 0.21 +0.5 41,154 + SM_b20029 0.43 -0.2 41,154 + SM_b20029 0.43 -0.9 41,155 - SM_b20029 0.43 -0.1 41,155 - SM_b20029 0.43 +1.6 41,188 - SM_b20029 0.50 -1.9 41,268 + SM_b20029 0.67 -0.7 41,330 + SM_b20029 0.80 +2.4 41,531 - SM_b20030 0.13 +0.2 41,614 - SM_b20030 0.22 +0.0 41,666 + SM_b20030 0.28 +0.5 41,666 + SM_b20030 0.28 +1.3 41,666 + SM_b20030 0.28 +0.1 41,666 + SM_b20030 0.28 +0.6 41,667 - SM_b20030 0.28 +0.9 41,667 - SM_b20030 0.28 +0.5 42,239 + -0.2 42,239 + -0.2 42,307 + -0.2 42,372 - SM_b20031 0.27 -1.2 42,372 - SM_b20031 0.27 +0.6 42,372 - SM_b20031 0.27 +2.6 42,372 - SM_b20031 0.27 -0.3 42,500 - SM_b20031 0.78 +0.1 42,500 - SM_b20031 0.78 -0.3 42,583 + -0.0 42,583 + -0.1 42,584 - +0.9 42,776 - SM_b20032 0.17 -0.4 42,825 + SM_b20032 0.24 +0.2 42,825 + SM_b20032 0.24 -0.6 42,826 - SM_b20032 0.24 -1.2 43,053 - SM_b20032 0.55 -0.2 43,275 + SM_b20032 0.85 +0.1 43,275 + SM_b20032 0.85 -1.5 43,275 + SM_b20032 0.85 +0.0 43,276 - SM_b20032 0.85 -0.0 43,276 - SM_b20032 0.85 -0.7 43,276 - SM_b20032 0.85 -0.5
Or see this region's nucleotide sequence