Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0503

Experiment: 1-ethyl-3-methylimidazolium acetate 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0502 and Psest_0503 are separated by 77 nucleotidesPsest_0503 and Psest_0504 are separated by 225 nucleotidesPsest_0504 and Psest_0505 overlap by 4 nucleotides Psest_0502: Psest_0502 - Uncharacterized protein conserved in bacteria, at 556,307 to 557,980 _0502 Psest_0503: Psest_0503 - Acyl dehydratase, at 558,058 to 558,513 _0503 Psest_0504: Psest_0504 - Putative effector of murein hydrolase LrgA, at 558,739 to 559,101 _0504 Psest_0505: Psest_0505 - Putative effector of murein hydrolase, at 559,098 to 559,817 _0505 Position (kb) 558 559Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 557.193 kb on + strand, within Psest_0502at 557.193 kb on + strand, within Psest_0502at 557.193 kb on + strand, within Psest_0502at 557.193 kb on + strand, within Psest_0502at 557.193 kb on + strand, within Psest_0502at 557.193 kb on + strand, within Psest_0502at 557.193 kb on + strand, within Psest_0502at 557.194 kb on - strand, within Psest_0502at 557.194 kb on - strand, within Psest_0502at 557.194 kb on - strand, within Psest_0502at 557.194 kb on - strand, within Psest_0502at 557.194 kb on - strand, within Psest_0502at 557.194 kb on - strand, within Psest_0502at 557.235 kb on + strand, within Psest_0502at 557.262 kb on + strand, within Psest_0502at 557.263 kb on - strand, within Psest_0502at 557.553 kb on + strand, within Psest_0502at 557.553 kb on + strand, within Psest_0502at 557.554 kb on - strand, within Psest_0502at 557.577 kb on + strand, within Psest_0502at 557.577 kb on + strand, within Psest_0502at 557.577 kb on + strand, within Psest_0502at 557.578 kb on - strand, within Psest_0502at 557.578 kb on - strand, within Psest_0502at 557.578 kb on - strand, within Psest_0502at 557.604 kb on + strand, within Psest_0502at 557.605 kb on - strand, within Psest_0502at 557.671 kb on - strand, within Psest_0502at 557.689 kb on - strand, within Psest_0502at 557.809 kb on - strand, within Psest_0502at 557.809 kb on - strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.811 kb on + strand, within Psest_0502at 557.812 kb on - strand, within Psest_0502at 557.812 kb on - strand, within Psest_0502at 557.812 kb on - strand, within Psest_0502at 557.812 kb on - strand, within Psest_0502at 557.812 kb on - strand, within Psest_0502at 557.812 kb on - strand, within Psest_0502at 558.012 kb on + strandat 558.013 kb on - strandat 558.092 kb on + strandat 558.092 kb on + strandat 558.092 kb on + strandat 558.093 kb on - strandat 558.196 kb on + strand, within Psest_0503at 558.268 kb on - strand, within Psest_0503at 558.480 kb on - strandat 558.480 kb on - strandat 558.480 kb on - strandat 558.480 kb on - strandat 558.535 kb on + strandat 558.535 kb on + strandat 558.536 kb on - strandat 558.536 kb on - strandat 558.536 kb on - strandat 558.562 kb on - strandat 558.617 kb on - strandat 558.617 kb on - strandat 558.617 kb on - strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.711 kb on + strandat 558.712 kb on - strandat 558.712 kb on - strandat 558.712 kb on - strandat 558.712 kb on - strandat 558.712 kb on - strandat 558.712 kb on - strandat 558.712 kb on - strandat 558.920 kb on - strand, within Psest_0504at 558.964 kb on + strand, within Psest_0504at 558.964 kb on + strand, within Psest_0504at 558.965 kb on - strand, within Psest_0504at 558.965 kb on - strand, within Psest_0504at 558.966 kb on + strand, within Psest_0504at 558.966 kb on + strand, within Psest_0504at 558.966 kb on + strand, within Psest_0504at 558.967 kb on - strand, within Psest_0504at 559.116 kb on + strandat 559.117 kb on - strandat 559.166 kb on + strandat 559.167 kb on - strandat 559.167 kb on - strandat 559.191 kb on + strand, within Psest_0505at 559.192 kb on - strand, within Psest_0505at 559.192 kb on - strand, within Psest_0505at 559.219 kb on + strand, within Psest_0505at 559.287 kb on + strand, within Psest_0505at 559.288 kb on - strand, within Psest_0505at 559.288 kb on - strand, within Psest_0505at 559.296 kb on + strand, within Psest_0505

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 40 mM
remove
557,193 + Psest_0502 0.53 +1.5
557,193 + Psest_0502 0.53 -1.3
557,193 + Psest_0502 0.53 +0.4
557,193 + Psest_0502 0.53 +1.7
557,193 + Psest_0502 0.53 -0.2
557,193 + Psest_0502 0.53 -1.5
557,193 + Psest_0502 0.53 +0.3
557,194 - Psest_0502 0.53 -2.0
557,194 - Psest_0502 0.53 -2.1
557,194 - Psest_0502 0.53 +0.3
557,194 - Psest_0502 0.53 +0.0
557,194 - Psest_0502 0.53 -1.5
557,194 - Psest_0502 0.53 -1.6
557,235 + Psest_0502 0.55 -0.7
557,262 + Psest_0502 0.57 +0.2
557,263 - Psest_0502 0.57 -0.1
557,553 + Psest_0502 0.74 +0.2
557,553 + Psest_0502 0.74 +2.4
557,554 - Psest_0502 0.74 +1.3
557,577 + Psest_0502 0.76 +0.3
557,577 + Psest_0502 0.76 -2.7
557,577 + Psest_0502 0.76 -1.3
557,578 - Psest_0502 0.76 +0.4
557,578 - Psest_0502 0.76 -0.4
557,578 - Psest_0502 0.76 -0.8
557,604 + Psest_0502 0.77 +0.4
557,605 - Psest_0502 0.78 -1.6
557,671 - Psest_0502 0.81 +0.8
557,689 - Psest_0502 0.83 -0.3
557,809 - Psest_0502 0.90 -0.6
557,809 - Psest_0502 0.90 -1.2
557,811 + Psest_0502 0.90 -1.6
557,811 + Psest_0502 0.90 -0.3
557,811 + Psest_0502 0.90 -1.7
557,811 + Psest_0502 0.90 -2.4
557,811 + Psest_0502 0.90 +1.6
557,811 + Psest_0502 0.90 +0.6
557,811 + Psest_0502 0.90 -1.2
557,811 + Psest_0502 0.90 +1.8
557,811 + Psest_0502 0.90 -0.6
557,812 - Psest_0502 0.90 -2.1
557,812 - Psest_0502 0.90 +0.1
557,812 - Psest_0502 0.90 -2.4
557,812 - Psest_0502 0.90 -1.4
557,812 - Psest_0502 0.90 -1.4
557,812 - Psest_0502 0.90 -0.9
558,012 + -1.1
558,013 - -1.6
558,092 + -1.3
558,092 + -0.1
558,092 + +0.0
558,093 - -1.3
558,196 + Psest_0503 0.30 -1.6
558,268 - Psest_0503 0.46 -0.3
558,480 - +0.7
558,480 - -0.5
558,480 - +0.5
558,480 - +0.1
558,535 + +1.2
558,535 + +0.8
558,536 - +1.4
558,536 - +0.7
558,536 - +0.0
558,562 - -1.2
558,617 - +0.6
558,617 - +0.1
558,617 - +0.1
558,711 + -0.3
558,711 + -0.3
558,711 + +0.1
558,711 + +1.4
558,711 + +0.3
558,711 + +1.1
558,711 + +0.9
558,711 + +1.5
558,711 + +0.2
558,711 + -0.4
558,712 - +0.9
558,712 - +0.1
558,712 - -1.3
558,712 - -0.5
558,712 - -2.0
558,712 - -0.1
558,712 - +1.0
558,920 - Psest_0504 0.50 +1.3
558,964 + Psest_0504 0.62 +0.3
558,964 + Psest_0504 0.62 -0.2
558,965 - Psest_0504 0.62 -3.0
558,965 - Psest_0504 0.62 -0.3
558,966 + Psest_0504 0.63 -0.6
558,966 + Psest_0504 0.63 -0.0
558,966 + Psest_0504 0.63 -2.0
558,967 - Psest_0504 0.63 -1.2
559,116 + +0.4
559,117 - -2.0
559,166 + -0.7
559,167 - -0.0
559,167 - +0.7
559,191 + Psest_0505 0.13 -0.0
559,192 - Psest_0505 0.13 -0.7
559,192 - Psest_0505 0.13 -0.1
559,219 + Psest_0505 0.17 +0.2
559,287 + Psest_0505 0.26 -0.3
559,288 - Psest_0505 0.26 +0.7
559,288 - Psest_0505 0.26 +0.8
559,296 + Psest_0505 0.28 -0.3

Or see this region's nucleotide sequence